WormBase Tree Display for Gene: WBGene00007919
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| WBGene00007919 | SMap | S_parent | Sequence | C34C6 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | cup-16 | Paper_evidence | WBPaper00050677 | |||||
| Person_evidence | WBPerson170 | ||||||||
| Sequence_name | C34C6.7 | ||||||||
| Molecular_name | C34C6.7a | ||||||||
| C34C6.7a.1 | |||||||||
| CE43435 | |||||||||
| C34C6.7b | |||||||||
| CE43411 | |||||||||
| C34C6.7b.1 | |||||||||
| Other_name | CELE_C34C6.7 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | cup-16 | ||||||||
| DB_info | Database | AceView | gene | 2I997 | |||||
| WormQTL | gene | WBGene00007919 | |||||||
| WormFlux | gene | WBGene00007919 | |||||||
| NDB | locus_tag | CELE_C34C6.7 | |||||||
| NCBI | gene | 174393 | |||||||
| RefSeq | protein | NM_001267252.2 | |||||||
| NM_001267253.3 | |||||||||
| TrEMBL | UniProtAcc | B7WN89 | |||||||
| B7WN88 | |||||||||
| UniProt_GCRP | UniProtAcc | B7WN88 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:48 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 17 Feb 2017 10:41:21 | WBPerson2970 | Name_change | CGC_name | cup-16 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | cup | ||||||||
| Allele | WBVar01499702 | ||||||||
| WBVar01498435 | |||||||||
| WBVar01695950 | |||||||||
| WBVar01499917 | |||||||||
| WBVar01626964 | |||||||||
| WBVar00751827 | |||||||||
| WBVar00751828 | |||||||||
| WBVar00751829 | |||||||||
| WBVar00751830 | |||||||||
| WBVar00751831 | |||||||||
| WBVar00751832 | |||||||||
| WBVar00751833 | |||||||||
| WBVar00751834 | |||||||||
| WBVar00751835 | |||||||||
| WBVar00751836 | |||||||||
| WBVar01252151 | |||||||||
| WBVar00751837 | |||||||||
| WBVar00751838 | |||||||||
| WBVar00751839 | |||||||||
| WBVar00174125 | |||||||||
| WBVar01499423 | |||||||||
| WBVar00174126 | |||||||||
| WBVar02147491 | |||||||||
| WBVar01308752 | |||||||||
| WBVar01935121 | |||||||||
| WBVar01604357 | |||||||||
| WBVar01498940 | |||||||||
| WBVar00104697 | |||||||||
| WBVar00104698 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00006496 | ||||||||
| 00006497 | |||||||||
| 00006498 | |||||||||
| 00006499 | |||||||||
| 00006500 | |||||||||
| Ortholog (17) | |||||||||
| Structured_description | Automated_description | Involved in endocytosis and lysosomal protein catabolic process. Predicted to be located in lysosome. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C34C6.7a | |||||||
| C34C6.7b | |||||||||
| Corresponding_CDS_history | C34C6.7:wp198 | ||||||||
| Corresponding_transcript | C34C6.7a.1 | ||||||||
| C34C6.7b.1 | |||||||||
| Associated_feature | WBsf657989 | ||||||||
| WBsf988799 | |||||||||
| WBsf221805 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00041856 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00011583 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1022610 | ||||||||
| Expr1033433 | |||||||||
| Expr1145874 | |||||||||
| Expr2010594 | |||||||||
| Expr2028834 | |||||||||
| Drives_construct | WBCnstr00033382 | ||||||||
| Construct_product | WBCnstr00033382 | ||||||||
| Microarray_results (16) | |||||||||
| Expression_cluster (267) | |||||||||
| Interaction (170) | |||||||||
| Map_info | Map | II | Position | 0.85112 | |||||
| Positive | Positive_clone | C34C6 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00050677 | ||||||||
| WBPaper00062388 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
