WormBase Tree Display for Gene: WBGene00007862
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| WBGene00007862 | SMap | S_parent | Sequence | C32C4 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | kvs-2 | Person_evidence | WBPerson260 | |||||
| WBPerson145 | |||||||||
| Sequence_name | C32C4.1 | ||||||||
| Molecular_name (24) | |||||||||
| Other_name | CELE_C32C4.1 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | kvs-2 | ||||||||
| DB_info | Database | AceView | gene | 5L125 | |||||
| WormQTL | gene | WBGene00007862 | |||||||
| WormFlux | gene | WBGene00007862 | |||||||
| NDB | locus_tag | CELE_C32C4.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00007862|UniProtKB=J3K003 | |||||||
| family | PTHR11537 | ||||||||
| NCBI | gene | 183120 | |||||||
| RefSeq | protein | NM_001269310.2 | |||||||
| NM_001129399.3 | |||||||||
| NM_073324.6 | |||||||||
| NM_001269311.3 | |||||||||
| NM_001269306.3 | |||||||||
| NM_001269307.4 | |||||||||
| NM_001269309.4 | |||||||||
| NM_001269308.3 | |||||||||
| TrEMBL | UniProtAcc | D9N132 | |||||||
| D5MCS0 | |||||||||
| D9N133 | |||||||||
| A7UQ08 | |||||||||
| Q18351 | |||||||||
| J3K003 | |||||||||
| D9N131 | |||||||||
| H9G2X0 | |||||||||
| UniProt_GCRP | UniProtAcc | J3K003 | |||||||
| OMIM | gene | 600397 | |||||||
| 607604 | |||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:48 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 10 Dec 2018 16:06:02 | WBPerson1983 | Name_change | CGC_name | kvs-2 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | kvs | ||||||||
| Allele (123) | |||||||||
| Strain | WBStrain00055331 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (22) | |||||||||
| Ortholog (77) | |||||||||
| Paralog (13) | |||||||||
| Structured_description | Automated_description | Predicted to enable delayed rectifier potassium channel activity. Predicted to be involved in potassium ion transmembrane transport. Predicted to be located in membrane. Predicted to be part of voltage-gated potassium channel complex. Human ortholog(s) of this gene implicated in developmental and epileptic encephalopathy 26; intracranial hypertension; and retinal cone dystrophy 3B. Is an ortholog of human KCNF1 (potassium voltage-gated channel modifier subfamily F member 1). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0080461 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:6231) | ||||
| DOID:9428 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:6300) | ||||||
| DOID:1826 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:6231) | ||||||
| DOID:0081022 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:19698) | ||||||
| Molecular_info | Corresponding_CDS | C32C4.1a | |||||||
| C32C4.1b | |||||||||
| C32C4.1c | |||||||||
| C32C4.1e | |||||||||
| C32C4.1f | |||||||||
| C32C4.1g | |||||||||
| C32C4.1h | |||||||||
| C32C4.1i | |||||||||
| Corresponding_CDS_history | C32C4.1:wp90 | ||||||||
| C32C4.1:wp137 | |||||||||
| C32C4.1d:wp229 | |||||||||
| Corresponding_transcript | C32C4.1a.1 | ||||||||
| C32C4.1b.1 | |||||||||
| C32C4.1c.1 | |||||||||
| C32C4.1e.1 | |||||||||
| C32C4.1f.1 | |||||||||
| C32C4.1g.1 | |||||||||
| C32C4.1h.1 | |||||||||
| C32C4.1i.1 | |||||||||
| Other_sequence (24) | |||||||||
| Associated_feature | WBsf647182 | ||||||||
| WBsf661650 | |||||||||
| WBsf1001155 | |||||||||
| WBsf232406 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00023069 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00023153 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00029408 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00029410 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00023953 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00011471 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00041659 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00023665 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1029046 | ||||||||
| Expr1033408 | |||||||||
| Expr1145681 | |||||||||
| Expr2001301 | |||||||||
| Expr2012985 | |||||||||
| Expr2019524 | |||||||||
| Expr2031217 | |||||||||
| Drives_construct | WBCnstr00033429 | ||||||||
| Construct_product | WBCnstr00033429 | ||||||||
| Microarray_results (28) | |||||||||
| Expression_cluster (170) | |||||||||
| SAGE_tag | SAGE:tgtgatcgtcgtgctcc | Strand | Antisense | ||||||
| SAGE:aattacttgattcaagt | Strand | Sense | |||||||
| Unambiguously_mapped | |||||||||
| SAGE:cattcttgtc | Strand | Antisense | |||||||
| SAGE:tttttttatt | Strand | Antisense | |||||||
| SAGE:tttttgatca | Strand | Sense | |||||||
| Unambiguously_mapped | |||||||||
| SAGE:tcaggagtcgaccgaat | Strand | Sense | |||||||
| Unambiguously_mapped | |||||||||
| SAGE:tttttgatcacaggaat | Strand | Sense | |||||||
| Unambiguously_mapped | |||||||||
| SAGE:tcaggagtcg | Strand | Sense | |||||||
| Unambiguously_mapped | |||||||||
| Interaction | WBInteraction000139629 | ||||||||
| WBInteraction000288481 | |||||||||
| WBInteraction000365543 | |||||||||
| WBInteraction000469833 | |||||||||
| WBInteraction000472695 | |||||||||
| Map_info | Map | V | Position | 2.63385 | |||||
| Positive | Positive_clone | C32C4 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00055090 | |||||||||
| Remark | The gene name kvs-2 was incorrectly assigned to WBGene00206383 in 2011 but was reassigned to this gene in the WS270 release of WormBase. | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
