WormBase Tree Display for Gene: WBGene00007718
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| WBGene00007718 | SMap | S_parent | Sequence | C25D7 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | otub-1 | Person_evidence | WBPerson1847 | |||||
| Sequence_name | C25D7.8 | ||||||||
| Molecular_name | C25D7.8 | ||||||||
| C25D7.8.1 | |||||||||
| CE08394 | |||||||||
| Other_name | CELE_C25D7.8 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | otub-1 | ||||||||
| DB_info | Database (12) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:48 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 30 Jul 2008 10:28:41 | WBPerson2970 | Name_change | CGC_name | otub-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | otub | ||||||||
| Allele (28) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (12) | |||||||||
| Contained_in_operon | CEOP5440 | ||||||||
| Ortholog (39) | |||||||||
| Paralog | WBGene00017754 | Caenorhabditis elegans | From_analysis | Panther | |||||
| Structured_description | Automated_description | Enables cysteine-type deubiquitinase activity. Predicted to be involved in proteolysis. Located in plasma membrane. Expressed in distal tip cell; neuronal sheath cell; neurons; pharynx; and ventral nerve cord. Human ortholog(s) of this gene implicated in IgA glomerulonephritis and lupus nephritis. Is an ortholog of human OTUB1 (OTU deubiquitinase, ubiquitin aldehyde binding 1). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0080162 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:23077) | ||||
| DOID:2986 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:23077) | ||||||
| Molecular_info | Corresponding_CDS | C25D7.8 | |||||||
| Corresponding_transcript | C25D7.8.1 | ||||||||
| Other_sequence (28) | |||||||||
| Associated_feature | WBsf647570 | ||||||||
| WBsf647571 | |||||||||
| WBsf232987 | |||||||||
| WBsf232988 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00041176 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00029190 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00041177 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00062133 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00011156 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr4842 | ||||||||
| Expr9442 | |||||||||
| Expr1018860 | |||||||||
| Expr1033342 | |||||||||
| Expr1145208 | |||||||||
| Expr2014665 | |||||||||
| Expr2032898 | |||||||||
| Drives_construct | WBCnstr00012270 | ||||||||
| WBCnstr00033532 | |||||||||
| Construct_product | WBCnstr00014007 | ||||||||
| WBCnstr00033532 | |||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (117) | |||||||||
| Interaction (26) | |||||||||
| Map_info | Map | V | Position | 7.28708 | Error | 0.013281 | |||
| Positive | Positive_clone | C25D7 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00030839 | ||||||||
| WBPaper00033022 | |||||||||
| WBPaper00038444 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00041103 | |||||||||
| WBPaper00049828 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00061547 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
