WormBase Tree Display for Gene: WBGene00007617
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| WBGene00007617 | SMap | S_parent | Sequence | C15H11 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | |||||||
| Name | CGC_name | rrsr-1 | Person_evidence | WBPerson555 | |||||
| Sequence_name | C15H11.9 | ||||||||
| Molecular_name | C15H11.9 | ||||||||
| C15H11.9.1 | |||||||||
| CE08186 | |||||||||
| Other_name | rrbs-1 | Person_evidence | WBPerson555 | ||||||
| CELE_C15H11.9 | Accession_evidence | NDB | BX284605 | ||||||
| Public_name | rrsr-1 | ||||||||
| DB_info | Database | AceView | gene | 5O906 | |||||
| WormQTL | gene | WBGene00007617 | |||||||
| WormFlux | gene | WBGene00007617 | |||||||
| NDB | locus_tag | CELE_C15H11.9 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00007617|UniProtKB=Q9XVT0 | |||||||
| family | PTHR17602 | ||||||||
| NCBI | gene | 179942 | |||||||
| RefSeq | protein | NM_074172.6 | |||||||
| SwissProt | UniProtAcc | Q9XVT0 | |||||||
| TREEFAM | TREEFAM_ID | TF313067 | |||||||
| UniProt_GCRP | UniProtAcc | Q9XVT0 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:48 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 08 Jan 2009 14:11:07 | WBPerson2970 | Name_change | CGC_name | rrbs-1 | ||||
| 3 | 13 Oct 2023 01:37:05 | WBPerson51134 | Name_change | CGC_name | rrsr-1 | ||||
| Other_name | rrbs-1 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | rrsr | ||||||||
| Allele (34) | |||||||||
| Strain | WBStrain00035908 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00102830 | ||||||||
| 00102831 | |||||||||
| 00102832 | |||||||||
| 00102833 | |||||||||
| 00102834 | |||||||||
| 00102835 | |||||||||
| 00102836 | |||||||||
| 00102837 | |||||||||
| 00115716 | |||||||||
| 00115717 | |||||||||
| Contained_in_operon | CEOP5416 | ||||||||
| Ortholog (39) | |||||||||
| Structured_description | Automated_description | Predicted to be involved in endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) and ribosomal large subunit biogenesis. Predicted to be located in nucleolus. Predicted to be part of preribosome, large subunit precursor. Is an ortholog of human RRS1 (ribosome biogenesis regulator 1 homolog). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C15H11.9 | |||||||
| Corresponding_transcript | C15H11.9.1 | ||||||||
| Other_sequence (63) | |||||||||
| Associated_feature | WBsf653385 | ||||||||
| WBsf655547 | |||||||||
| WBsf1002008 | |||||||||
| WBsf1002009 | |||||||||
| WBsf234946 | |||||||||
| WBsf234947 | |||||||||
| Experimental_info | RNAi_result (14) | ||||||||
| Expr_pattern | Expr1024318 | ||||||||
| Expr1033285 | |||||||||
| Expr1144682 | |||||||||
| Expr2015541 | |||||||||
| Expr2033776 | |||||||||
| Construct_product | WBCnstr00016317 | ||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (111) | |||||||||
| Interaction (190) | |||||||||
| Map_info | Map | V | Position | 6.30534 | Error | 0.000875 | |||
| Positive | Positive_clone | C15H11 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00036429 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
