WormBase Tree Display for Gene: WBGene00007616
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| WBGene00007616 | SMap | S_parent | Sequence | C15H11 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | rpoa-12 | Person_evidence | WBPerson10054 | |||||
| Sequence_name | C15H11.8 | ||||||||
| Molecular_name | C15H11.8 | ||||||||
| C15H11.8.1 | |||||||||
| CE08185 | |||||||||
| Other_name | CELE_C15H11.8 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | rpoa-12 | ||||||||
| DB_info | Database | AceView | gene | 5O904 | |||||
| WormQTL | gene | WBGene00007616 | |||||||
| WormFlux | gene | WBGene00007616 | |||||||
| NDB | locus_tag | CELE_C15H11.8 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00007616|UniProtKB=O17587 | |||||||
| family | PTHR11239 | ||||||||
| NCBI | gene | 182648 | |||||||
| RefSeq | protein | NM_074171.7 | |||||||
| TREEFAM | TREEFAM_ID | TF313881 | |||||||
| TrEMBL | UniProtAcc | O17587 | |||||||
| UniProt_GCRP | UniProtAcc | O17587 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:48 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 28 Sep 2012 14:29:00 | WBPerson2970 | Name_change | CGC_name | rpoa-12 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | rpoa | ||||||||
| Allele (17) | |||||||||
| Strain | WBStrain00035908 | ||||||||
| WBStrain00036322 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (12) | |||||||||
| Contained_in_operon | CEOP5416 | ||||||||
| Ortholog (35) | |||||||||
| Paralog | WBGene00022400 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00022309 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Automated_description | Predicted to enable DNA-directed 5'-3' RNA polymerase activity; nucleic acid binding activity; and zinc ion binding activity. Predicted to contribute to RNA polymerase I activity. Predicted to be involved in termination of RNA polymerase I transcription. Predicted to be located in nucleolus. Predicted to be part of RNA polymerase I complex. Is an ortholog of human POLR1H (RNA polymerase I subunit H). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C15H11.8 | |||||||
| Corresponding_transcript | C15H11.8.1 | ||||||||
| Other_sequence (24) | |||||||||
| Associated_feature | WBsf653384 | ||||||||
| Transcription_factor | WBTranscriptionFactor000247 | ||||||||
| WBTranscriptionFactor000586 | |||||||||
| Experimental_info | RNAi_result (22) | ||||||||
| Expr_pattern | Expr1011165 | ||||||||
| Expr1033284 | |||||||||
| Expr1144681 | |||||||||
| Expr2015498 | |||||||||
| Expr2033733 | |||||||||
| Microarray_results (21) | |||||||||
| Expression_cluster (122) | |||||||||
| Interaction (119) | |||||||||
| Map_info | Map | V | Position | 6.30412 | |||||
| Positive | Positive_clone | C15H11 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00027309 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
