WormBase Tree Display for Gene: WBGene00007433
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| WBGene00007433 | SMap | S_parent | Sequence | C08B11 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | swsn-7 | Person_evidence | WBPerson407 | |||||
| WBPerson552 | |||||||||
| Sequence_name | C08B11.3 | ||||||||
| Molecular_name | C08B11.3a | ||||||||
| C08B11.3a.1 | |||||||||
| CE01473 | |||||||||
| C08B11.3b | |||||||||
| CE52617 | |||||||||
| C08B11.3b.1 | |||||||||
| Other_name | CELE_C08B11.3 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | swsn-7 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:48 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 11 Feb 2011 15:09:46 | WBPerson2970 | Name_change | CGC_name | swsn-7 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | swsn | ||||||||
| Allele (63) | |||||||||
| Strain | WBStrain00031322 | ||||||||
| WBStrain00037395 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00115557 | ||||||||
| Contained_in_operon | CEOP2324 | ||||||||
| Ortholog (36) | |||||||||
| Structured_description | Automated_description | Predicted to enable DNA binding activity. Used to study alcohol use disorder. Human ortholog(s) of this gene implicated in Coffin-Siris syndrome 6 and gastrointestinal system cancer (multiple). Is an ortholog of human ARID2 (AT-rich interaction domain 2). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Experimental_model | DOID:1574 | Homo sapiens | Paper_evidence | WBPaper00046494 | ||||
| Curator_confirmed | WBPerson324 | ||||||||
| Date_last_updated | 20 May 2019 00:00:00 | ||||||||
| Potential_model | DOID:0050866 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:18037) | |||||
| DOID:9256 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:18037) | ||||||
| DOID:0080297 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:18037) | ||||||
| DOID:684 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:18037) | ||||||
| Models_disease_asserted | WBDOannot00000669 | ||||||||
| Molecular_info | Corresponding_CDS | C08B11.3a | |||||||
| C08B11.3b | |||||||||
| Corresponding_transcript | C08B11.3a.1 | ||||||||
| C08B11.3b.1 | |||||||||
| Other_sequence (12) | |||||||||
| Associated_feature | WBsf665758 | ||||||||
| WBsf981232 | |||||||||
| WBsf988635 | |||||||||
| WBsf1012639 | |||||||||
| WBsf223424 | |||||||||
| WBsf223425 | |||||||||
| WBsf223426 | |||||||||
| Transcription_factor | WBTranscriptionFactor000878 | ||||||||
| Experimental_info | RNAi_result (19) | ||||||||
| Expr_pattern | Chronogram19 | ||||||||
| Expr5205 | |||||||||
| Expr10220 | |||||||||
| Expr10221 | |||||||||
| Expr11490 | |||||||||
| Expr1028527 | |||||||||
| Expr1033201 | |||||||||
| Expr1144126 | |||||||||
| Expr2017161 | |||||||||
| Expr2035297 | |||||||||
| Drives_construct | WBCnstr00003307 | ||||||||
| WBCnstr00015189 | |||||||||
| WBCnstr00015190 | |||||||||
| WBCnstr00033739 | |||||||||
| Construct_product | WBCnstr00018915 | ||||||||
| WBCnstr00018927 | |||||||||
| WBCnstr00033739 | |||||||||
| Microarray_results (21) | |||||||||
| Expression_cluster (164) | |||||||||
| Interaction (30) | |||||||||
| Map_info | Map | II | Position | 0.645767 | Error | 0.000977 | |||
| Positive | Positive_clone | C08B11 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00032230 | ||||||||
| WBPaper00034662 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00038964 | |||||||||
| WBPaper00043740 | |||||||||
| WBPaper00044707 | |||||||||
| WBPaper00046148 | |||||||||
| WBPaper00046494 | |||||||||
| WBPaper00047851 | |||||||||
| WBPaper00048493 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00061738 | |||||||||
| WBPaper00061786 | |||||||||
| WBPaper00063737 | |||||||||
| WBPaper00064315 | |||||||||
| WBPaper00065308 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
