WormBase Tree Display for Gene: WBGene00007256
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| WBGene00007256 | SMap | S_parent | Sequence | C01H6 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | |||||||
| Name | CGC_name | swsn-9 | Person_evidence | WBPerson260 | |||||
| WBPerson407 | |||||||||
| Sequence_name | C01H6.7 | ||||||||
| Molecular_name | C01H6.7a | ||||||||
| C01H6.7a.1 | |||||||||
| CE05190 | |||||||||
| C01H6.7b | |||||||||
| CE40891 | |||||||||
| C01H6.7a.2 | |||||||||
| C01H6.7b.1 | |||||||||
| Other_name | tag-298 | ||||||||
| CELE_C01H6.7 | Accession_evidence | NDB | BX284601 | ||||||
| Public_name | swsn-9 | ||||||||
| DB_info | Database | AceView | gene | 1H803 | |||||
| WormQTL | gene | WBGene00007256 | |||||||
| WormFlux | gene | WBGene00007256 | |||||||
| NDB | locus_tag | CELE_C01H6.7 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00007256|UniProtKB=Q17581 | |||||||
| family | PTHR22881 | ||||||||
| NCBI | gene | 172461 | |||||||
| RefSeq | protein | NM_001380647.2 | |||||||
| NM_001380648.1 | |||||||||
| TREEFAM | TREEFAM_ID | TF106439 | |||||||
| TrEMBL | UniProtAcc | A5JYT2 | |||||||
| Q17581 | |||||||||
| UniProt_GCRP | UniProtAcc | Q17581 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:47 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 22 Apr 2005 11:55:18 | WBPerson2970 | Name_change | CGC_name | tag-298 | ||||
| 3 | 29 Aug 2012 16:38:19 | WBPerson2970 | Name_change | CGC_name | swsn-9 | ||||
| Other_name | tag-298 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | swsn | ||||||||
| Allele (30) | |||||||||
| Strain | WBStrain00036150 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00004716 | ||||||||
| 00004717 | |||||||||
| 00004718 | |||||||||
| Contained_in_operon | CEOP1372 | ||||||||
| Ortholog (37) | |||||||||
| Structured_description | Automated_description | Predicted to enable lysine-acetylated histone binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Expressed in muscle cell; pharynx; and somatic gonad. Used to study alcohol use disorder. Human ortholog(s) of this gene implicated in acute myeloid leukemia; carcinoma (multiple); and glioblastoma. Is an ortholog of human BRD7 (bromodomain containing 7). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Experimental_model | DOID:1574 | Homo sapiens | Paper_evidence | WBPaper00046494 | ||||
| Curator_confirmed | WBPerson324 | ||||||||
| Date_last_updated | 20 May 2019 00:00:00 | ||||||||
| Potential_model | DOID:3068 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:14310) | |||||
| DOID:3908 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:14310) | ||||||
| DOID:2152 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:14310) | ||||||
| DOID:3070 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:14310) | ||||||
| DOID:0080199 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:14310) | ||||||
| DOID:3069 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:14310) | ||||||
| DOID:9119 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:14310) | ||||||
| Models_disease_asserted | WBDOannot00000670 | ||||||||
| Molecular_info | Corresponding_CDS | C01H6.7a | |||||||
| C01H6.7b | |||||||||
| Corresponding_transcript | C01H6.7a.1 | ||||||||
| C01H6.7a.2 | |||||||||
| C01H6.7b.1 | |||||||||
| Other_sequence (20) | |||||||||
| Associated_feature (12) | |||||||||
| Experimental_info | RNAi_result (16) | ||||||||
| Expr_pattern | Expr12274 | ||||||||
| Expr1012233 | |||||||||
| Expr1033129 | |||||||||
| Expr1143490 | |||||||||
| Expr2017162 | |||||||||
| Expr2035298 | |||||||||
| Drives_construct | WBCnstr00020252 | ||||||||
| WBCnstr00020253 | |||||||||
| WBCnstr00037870 | |||||||||
| Construct_product | WBCnstr00020252 | ||||||||
| WBCnstr00020253 | |||||||||
| WBCnstr00037870 | |||||||||
| Regulate_expr_cluster | WBPaper00060764:swsn-9(ok1354)_downregulated | ||||||||
| WBPaper00060764:swsn-9(ok1354)_upregulated | |||||||||
| Microarray_results (23) | |||||||||
| Expression_cluster (168) | |||||||||
| SAGE_tag (14) | |||||||||
| Interaction (91) | |||||||||
| Map_info | Map | I | Position | 1.84959 | Error | 0.001697 | |||
| Positive | Positive_clone | C01H6 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 5165 | |||||||
| 4477 | |||||||||
| 4521 | |||||||||
| Pseudo_map_position | |||||||||
| Reference (15) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
