WormBase Tree Display for Gene: WBGene00007045
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| WBGene00007045 | SMap | S_parent | Sequence | T04A8 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | |||||||
| Name | CGC_name | pgap-2 | |||||||
| Sequence_name | T04A8.12 | ||||||||
| Molecular_name | T04A8.12 | ||||||||
| T04A8.12.1 | |||||||||
| CE43481 | |||||||||
| Other_name | tag-189 | ||||||||
| CELE_T04A8.12 | Accession_evidence | NDB | BX284603 | ||||||
| Public_name | pgap-2 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 13:09:06 | WBPerson1845 | Event | Created | |||
| 2 | 05 Oct 2005 17:16:52 | WBPerson2970 | Event | Acquires_merge | WBGene00011413 | ||||
| Name_change | Sequence_name | T04A8.12 | |||||||
| 3 | 11 Dec 2018 16:50:34 | WBPerson1983 | Name_change | CGC_name | pgap-2 | ||||
| Other_name | tag-189 | ||||||||
| Acquires_merge | WBGene00011413 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | pgap | ||||||||
| Allele (12) | |||||||||
| Strain | WBStrain00035891 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (12) | |||||||||
| Contained_in_operon | CEOP3212 | ||||||||
| Ortholog (47) | |||||||||
| Paralog | WBGene00012433 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00044480 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00020720 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00012610 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00009904 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00015753 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00018113 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Automated_description | Predicted to be involved in GPI anchor biosynthetic process. Predicted to be located in Golgi membrane and endoplasmic reticulum membrane. Human ortholog(s) of this gene implicated in hyperphosphatasia with impaired intellectual development syndrome 3. Is an ortholog of human PGAP2 (post-GPI attachment to proteins 2). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0070435 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:17893) | ||||
| Molecular_info | Corresponding_CDS | T04A8.12 | |||||||
| Corresponding_CDS_history | T04A8.12:wp200 | ||||||||
| Corresponding_transcript | T04A8.12.1 | ||||||||
| Other_sequence (18) | |||||||||
| Associated_feature | WBsf224785 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00062753 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00052331 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00062351 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00062754 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00111242 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00035116 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00005122 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00018108 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr3302 | ||||||||
| Expr1012717 | |||||||||
| Expr1033024 | |||||||||
| Expr1155966 | |||||||||
| Expr2017237 | |||||||||
| Expr2035373 | |||||||||
| Drives_construct | WBCnstr00011299 | ||||||||
| WBCnstr00034027 | |||||||||
| Construct_product | WBCnstr00034027 | ||||||||
| Microarray_results (22) | |||||||||
| Expression_cluster (75) | |||||||||
| Interaction (33) | |||||||||
| Map_info | Map | III | Position | -2.80535 | Error | 0.003245 | |||
| Positive | Positive_clone | T04A8 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 5549 | |||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00050531 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00065106 | |||||||||
| Remark | tag-189 is parsed from CGC strain VC582 | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
