WormBase Tree Display for Gene: WBGene00007012
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WBGene00007012 | Evidence | Author_evidence | Bourbon H-M | |||||
---|---|---|---|---|---|---|---|---|
SMap | S_parent | Sequence | ZK546 | |||||
Identity | Version | 1 | ||||||
Name | CGC_name | mdt-4 | ||||||
Sequence_name | ZK546.13 | |||||||
Molecular_name | ZK546.13 | |||||||
ZK546.13.1 | ||||||||
CE34460 | ||||||||
Other_name | CELE_ZK546.13 | Accession_evidence | NDB | BX284602 | ||||
Public_name | mdt-4 | |||||||
DB_info | Database | AceView | gene | 2F232 | ||||
WormQTL | gene | WBGene00007012 | ||||||
WormFlux | gene | WBGene00007012 | ||||||
NDB | locus_tag | CELE_ZK546.13 | ||||||
Panther | gene | CAEEL|WormBase=WBGene00007012|UniProtKB=Q23523 | ||||||
family | PTHR13208 | |||||||
NCBI | gene | 173852 | ||||||
RefSeq | protein | NM_062504.5 | ||||||
SwissProt | UniProtAcc | Q23523 | ||||||
TREEFAM | TREEFAM_ID | TF332476 | ||||||
UniProt_GCRP | UniProtAcc | Q23523 | ||||||
Species | Caenorhabditis elegans | |||||||
History | Version_change | 1 | 14 May 2004 11:48:16 | WBPerson1845 | Event | Created | ||
Status | Live | |||||||
Gene_info | Biotype | SO:0001217 | ||||||
Gene_class | mdt | |||||||
Allele (32) | ||||||||
RNASeq_FPKM (74) | ||||||||
GO_annotation | 00078727 | |||||||
00078728 | ||||||||
00078729 | ||||||||
00078730 | ||||||||
00078731 | ||||||||
00115199 | ||||||||
00115200 | ||||||||
00115201 | ||||||||
Contained_in_operon | CEOP2144 | |||||||
Ortholog (36) | ||||||||
Paralog | WBGene00022766 | |||||||
Structured_description | Automated_description | Predicted to enable transcription coregulator activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be part of core mediator complex. Human ortholog(s) of this gene implicated in cervical cancer. Is an ortholog of human MED4 (mediator complex subunit 4). | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | |||||||
WBPerson37462 | ||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | |||||||
Date_last_updated | 29 Nov 2023 00:00:00 | |||||||
Disease_info | Potential_model | DOID:4362 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:17903) | |||
Molecular_info | Corresponding_CDS | ZK546.13 | ||||||
Corresponding_CDS_history | ZK546.13:wp102 | |||||||
Corresponding_transcript | ZK546.13.1 | |||||||
Other_sequence (11) | ||||||||
Associated_feature | WBsf665497 | |||||||
WBsf987747 | ||||||||
WBsf222978 | ||||||||
Experimental_info | RNAi_result | WBRNAi00108641 | Inferred_automatically | RNAi_primary | ||||
WBRNAi00059503 | Inferred_automatically | RNAi_primary | ||||||
WBRNAi00009475 | Inferred_automatically | RNAi_primary | ||||||
WBRNAi00117660 | Inferred_automatically | RNAi_primary | ||||||
WBRNAi00117662 | Inferred_automatically | RNAi_primary | ||||||
WBRNAi00117661 | Inferred_automatically | RNAi_primary | ||||||
WBRNAi00108566 | Inferred_automatically | RNAi_primary | ||||||
WBRNAi00085236 | Inferred_automatically | RNAi_primary | ||||||
Expr_pattern | Expr1018473 | |||||||
Expr1033002 | ||||||||
Expr1162917 | ||||||||
Expr2013484 | ||||||||
Expr2031718 | ||||||||
Drives_construct | WBCnstr00034038 | |||||||
Construct_product | WBCnstr00034038 | |||||||
Microarray_results (11) | ||||||||
Expression_cluster (63) | ||||||||
Interaction (64) | ||||||||
Map_info | Map | II | Position | -2.8 | ||||
Positive | Positive_clone | ZK546 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
Pseudo_map_position | ||||||||
Reference | WBPaper00006530 | |||||||
WBPaper00027707 | ||||||||
WBPaper00029038 | ||||||||
WBPaper00038491 | ||||||||
WBPaper00055090 | ||||||||
WBPaper00064789 | ||||||||
WBPaper00065308 | ||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||
[200225 pad] Modified Map position as it was a reverse physical that could not be fixed by automated methods. (-2.84911) | ||||||||
[200811 gw3] Modified Map position as it was a reverse physical that could not be fixed by automated methods. (-2.62093) | ||||||||
Method | Gene |