WormBase Tree Display for Gene: WBGene00007000
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| WBGene00007000 | Evidence | Paper_evidence | WBPaper00005431 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | Y71H2AM | ||||||
| Identity | Version | 3 | |||||||
| Name | CGC_name | tufm-1 | Paper_evidence | WBPaper00004739 | |||||
| Person_evidence | WBPerson4204 | ||||||||
| Sequence_name | Y71H2AM.23 | ||||||||
| Molecular_name | Y71H2AM.23 | ||||||||
| Y71H2AM.23.1 | |||||||||
| CE27322 | |||||||||
| Other_name | EF-Tu1 | ||||||||
| Y71H2_378.a | Curator_confirmed | WBPerson1983 | |||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| CELE_Y71H2AM.23 | Accession_evidence | NDB | BX284603 | ||||||
| Public_name | tufm-1 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 12:35:33 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| 2 | 22 Nov 2005 11:04:11 | WBPerson2970 | Name_change | CGC_name | tufm-1 | ||||
| 3 | 10 Jun 2014 12:12:12 | WBPerson1983 | Event | Acquires_merge | WBGene00022187 | ||||
| Acquires_merge | WBGene00022187 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | tufm | ||||||||
| Allele (66) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00012089 | ||||||||
| 00012090 | |||||||||
| 00012091 | |||||||||
| 00012092 | |||||||||
| 00012093 | |||||||||
| 00012094 | |||||||||
| 00012095 | |||||||||
| 00012096 | |||||||||
| 00115183 | |||||||||
| 00115184 | |||||||||
| Ortholog (39) | |||||||||
| Paralog (17) | |||||||||
| Structured_description | Automated_description | Predicted to enable translation elongation factor activity. Predicted to be involved in mitochondrial translational elongation. Predicted to be located in mitochondrion. Human ortholog(s) of this gene implicated in combined oxidative phosphorylation deficiency 4. Is an ortholog of human TUFM (Tu translation elongation factor, mitochondrial). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0111494 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:12420) | ||||
| Molecular_info | Corresponding_CDS | Y71H2AM.23 | |||||||
| Corresponding_transcript | Y71H2AM.23.1 | ||||||||
| Other_sequence (136) | |||||||||
| Associated_feature | WBsf650890 | ||||||||
| WBsf666610 | |||||||||
| WBsf666611 | |||||||||
| WBsf981419 | |||||||||
| WBsf991610 | |||||||||
| WBsf226306 | |||||||||
| WBsf226307 | |||||||||
| WBsf226308 | |||||||||
| WBsf226309 | |||||||||
| WBsf226310 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00033246 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00066560 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00078595 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00064229 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00066746 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00009417 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00058246 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00109871 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00026950 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00078609 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1358 | ||||||||
| Expr1023882 | |||||||||
| Expr1032995 | |||||||||
| Expr1161663 | |||||||||
| Expr2017634 | |||||||||
| Expr2035774 | |||||||||
| Antibody | WBAntibody00000384 | ||||||||
| Microarray_results (21) | |||||||||
| Expression_cluster (145) | |||||||||
| Interaction (90) | |||||||||
| Map_info | Map | III | Position | -10.0104 | Error | 0.124688 | |||
| Positive | Positive_clone | Y71H2AM | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 5577 | |||||||
| 5660 | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00005431 | ||||||||
| WBPaper00005623 | |||||||||
| WBPaper00026703 | |||||||||
| WBPaper00027762 | |||||||||
| WBPaper00028463 | |||||||||
| WBPaper00029319 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00041022 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00062388 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| [140610 pad] Gene was missing Acquires_merge Event history data so inferred from Acquires_merge tag. | |||||||||
| Method | Gene |
