WormBase Tree Display for Gene: WBGene00006919
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| WBGene00006919 | Evidence | Person_evidence | WBPerson649 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | F46F11 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | vha-10 | |||||||
| Sequence_name | F46F11.5 | ||||||||
| Molecular_name | F46F11.5 | ||||||||
| F46F11.5.1 | |||||||||
| CE10604 | |||||||||
| Other_name | CELE_F46F11.5 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | vha-10 | ||||||||
| DB_info | Database | AceView | gene | 1G178 | |||||
| WormQTL | gene | WBGene00006919 | |||||||
| WormFlux | gene | WBGene00006919 | |||||||
| NDB | locus_tag | CELE_F46F11.5 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00006919|UniProtKB=P91303 | |||||||
| family | PTHR12713 | ||||||||
| NCBI | gene | 172216 | |||||||
| RefSeq | protein | NM_059240.7 | |||||||
| SwissProt | UniProtAcc | P91303 | |||||||
| TREEFAM | TREEFAM_ID | TF313777 | |||||||
| UniProt_GCRP | UniProtAcc | P91303 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:43 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | vha | ||||||||
| Allele (12) | |||||||||
| Strain | WBStrain00051298 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (12) | |||||||||
| Contained_in_operon | CEOP1264 | ||||||||
| Ortholog (36) | |||||||||
| Structured_description | Concise_description | vha-10 encodes an ortholog of subunit G of the cytoplasmic (V1) domainof vacuolar proton-translocating ATPase (V-ATPase); VHA-10 is requiredfor necrosis, since vha-10(RNAi) suppresses necrotic neurodegenerationand thapsigargin-induced cell death; VHA-10 is a predicted cytosolicstator (stalk) component. | Paper_evidence | WBPaper00026649 | |||||
| WBPaper00028773 | |||||||||
| WBPaper00028774 | |||||||||
| WBPaper00028775 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 19 Nov 2006 00:00:00 | ||||||||
| Automated_description | Predicted to enable proton-transporting ATPase activity, rotational mechanism. Involved in positive regulation of programmed cell death and programmed cell death. Predicted to be part of vacuolar proton-transporting V-type ATPase complex. Is an ortholog of human ATP6V1G2 (ATPase H+ transporting V1 subunit G2). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F46F11.5 | |||||||
| Corresponding_transcript | F46F11.5.1 | ||||||||
| Other_sequence (128) | |||||||||
| Associated_feature | WBsf219457 | ||||||||
| WBsf219458 | |||||||||
| WBsf219459 | |||||||||
| Experimental_info | RNAi_result (16) | ||||||||
| Expr_pattern | Expr1010407 | ||||||||
| Expr1032936 | |||||||||
| Expr1151374 | |||||||||
| Expr2017976 | |||||||||
| Expr2036112 | |||||||||
| Drives_construct | WBCnstr00034099 | ||||||||
| Construct_product | WBCnstr00034099 | ||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (149) | |||||||||
| Interaction (67) | |||||||||
| Map_info | Map | I | Position | 0.268315 | Error | 0.004058 | |||
| Positive | Positive_clone | F46F11 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00026649 | ||||||||
| WBPaper00036659 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00049828 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00058870 | |||||||||
| WBPaper00059755 | |||||||||
| WBPaper00064325 | |||||||||
| WBPaper00064339 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
