WormBase Tree Display for Gene: WBGene00006918
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| WBGene00006918 | Evidence | Person_evidence | WBPerson649 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | ZK970 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | vha-9 | |||||||
| Sequence_name | ZK970.4 | ||||||||
| Molecular_name | ZK970.4 | ||||||||
| ZK970.4.1 | |||||||||
| CE02404 | |||||||||
| Other_name | CELE_ZK970.4 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | vha-9 | ||||||||
| DB_info | Database | AceView | gene | 2K592 | |||||
| WormQTL | gene | WBGene00006918 | |||||||
| WormFlux | gene | WBGene00006918 | |||||||
| NDB | locus_tag | CELE_ZK970.4 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00006918|UniProtKB=Q23680 | |||||||
| family | PTHR13861 | ||||||||
| NCBI | gene | 174596 | |||||||
| RefSeq | protein | NM_001383933.1 | |||||||
| SwissProt | UniProtAcc | Q23680 | |||||||
| TREEFAM | TREEFAM_ID | TF300080 | |||||||
| UniProt_GCRP | UniProtAcc | Q23680 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:43 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | vha | ||||||||
| Allele (14) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00079336 | ||||||||
| 00079337 | |||||||||
| 00079338 | |||||||||
| 00079339 | |||||||||
| 00115013 | |||||||||
| 00115014 | |||||||||
| 00115015 | |||||||||
| 00115016 | |||||||||
| Contained_in_operon | CEOP2476 | ||||||||
| Ortholog (37) | |||||||||
| Structured_description | Concise_description | vha-9 encodes an ortholog of subunit F of the cytoplasmic (V1) domain ofvacuolar proton-translocating ATPase (V-ATPase); VHA-9 is a predictedcytosolic rotor (stalk) component. | Paper_evidence | WBPaper00026649 | |||||
| WBPaper00028773 | |||||||||
| WBPaper00028774 | |||||||||
| WBPaper00028775 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 19 Nov 2006 00:00:00 | ||||||||
| Automated_description | Predicted to enable proton-transporting ATPase activity, rotational mechanism. Involved in lysosomal lumen acidification. Predicted to be located in membrane. Predicted to be part of proton-transporting V-type ATPase, V1 domain. Is an ortholog of human ATP6V1F (ATPase H+ transporting V1 subunit F). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | ZK970.4 | |||||||
| Corresponding_transcript | ZK970.4.1 | ||||||||
| Other_sequence (98) | |||||||||
| Associated_feature | WBsf650495 | ||||||||
| WBsf666036 | |||||||||
| WBsf981259 | |||||||||
| WBsf223777 | |||||||||
| WBsf223778 | |||||||||
| WBsf223779 | |||||||||
| Experimental_info | RNAi_result (22) | ||||||||
| Expr_pattern | Expr1022757 | ||||||||
| Expr1032935 | |||||||||
| Expr1163285 | |||||||||
| Expr2017995 | |||||||||
| Expr2036131 | |||||||||
| Drives_construct | WBCnstr00034100 | ||||||||
| Construct_product | WBCnstr00034100 | ||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (110) | |||||||||
| Interaction (46) | |||||||||
| Map_info | Map | II | Position | 2.3612 | Error | 0.002929 | |||
| Positive | Positive_clone | ZK970 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00036659 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00047389 | |||||||||
| WBPaper00049828 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00058870 | |||||||||
| WBPaper00059755 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
