WormBase Tree Display for Gene: WBGene00006902
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WBGene00006902 | SMap | S_parent | Sequence | CHROMOSOME_I | |||
---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||
Name | CGC_name | vet-6 | Person_evidence | WBPerson698 | |||
Sequence_name | F44F1.7 | ||||||
Molecular_name | F44F1.7 | ||||||
F44F1.7.1 | |||||||
CE10424 | |||||||
Other_name | CELE_F44F1.7 | Accession_evidence | NDB | BX284601 | |||
Public_name | vet-6 | ||||||
DB_info | Database | AceView | gene | 1N863 | |||
WormQTL | gene | WBGene00006902 | |||||
WormFlux | gene | WBGene00006902 | |||||
NDB | locus_tag | CELE_F44F1.7 | |||||
Panther | gene | CAEEL|WormBase=WBGene00006902|UniProtKB=G5EEK5 | |||||
family | PTHR21504 | ||||||
NCBI | gene | 173191 | |||||
RefSeq | protein | NM_060931.9 | |||||
TREEFAM | TREEFAM_ID | TF322610 | |||||
TrEMBL | UniProtAcc | G5EEK5 | |||||
UniProt_GCRP | UniProtAcc | G5EEK5 | |||||
Species | Caenorhabditis elegans | ||||||
History | Version_change (2) | ||||||
Acquires_merge | WBGene00009699 | ||||||
Status | Live | ||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | vet | ||||||
Allele (47) | |||||||
Legacy_information | [C.elegansII] NMK. Abundant pre-gastrulation transcript. Encodes novel protein. vet-6:lacZ expressed in many cells from 28-cell stage to end of gastrulation. [Schauer and Wood 1990; BW] | ||||||
RNASeq_FPKM (74) | |||||||
GO_annotation | 00016400 | ||||||
00016401 | |||||||
00016402 | |||||||
00114979 | |||||||
Ortholog (25) | |||||||
Paralog (12) | |||||||
Structured_description | Concise_description | vet-6 encodes a protein that contains a spectrin repeat; vet-6 is preferentially transcribed in embryos prior to gastrulation. | Paper_evidence | WBPaper00002526 | |||
WBPaper00002567 | |||||||
WBPaper00014776 | |||||||
Curator_confirmed | WBPerson48 | ||||||
Date_last_updated | 10 Jan 2005 00:00:00 | ||||||
Automated_description | Involved in gastrulation. Located in cytoplasm. | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | F44F1.7 | |||||
Corresponding_transcript | F44F1.7.1 | ||||||
Other_sequence | FG620562.1 | ||||||
Associated_feature | WBsf643794 | ||||||
WBsf985809 | |||||||
WBsf218706 | |||||||
Experimental_info | RNAi_result | WBRNAi00014950 | Inferred_automatically | RNAi_primary | |||
WBRNAi00093883 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00047314 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00093938 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00032254 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00093954 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Expr1021307 | ||||||
Expr1032926 | |||||||
Expr1151166 | |||||||
Expr2017972 | |||||||
Expr2036108 | |||||||
Drives_construct | WBCnstr00034105 | ||||||
Construct_product | WBCnstr00018445 | ||||||
WBCnstr00034105 | |||||||
Microarray_results (18) | |||||||
Expression_cluster (193) | |||||||
Interaction (61) | |||||||
Map_info | Map | I | Position | 17.3475 | Error | 0.030561 | |
Positive | Positive_clone | BW#104 | |||||
F44F1 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Mapping_data | Multi_point | 5071 | |||||
Pseudo_map_position | |||||||
Reference | WBPaper00002526 | ||||||
WBPaper00002567 | |||||||
WBPaper00014776 | |||||||
WBPaper00015183 | |||||||
WBPaper00032509 | |||||||
WBPaper00038341 | |||||||
WBPaper00056814 | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |