WormBase Tree Display for Gene: WBGene00006861

WBGene00006861 SMap: S_parent: Sequence: C24H10
  Identity: Version: 2
    Name: CGC_name: cal-5 Person_evidence: WBPerson261
            WBPerson71
      Sequence_name: C24H10.5
      Molecular_name: C24H10.5
        C24H10.5.1
        CE29674
      Other_name: uvt-2 Person_evidence: WBPerson71
        CELE_C24H10.5 Accession_evidence: NDB BX284606
      Public_name: cal-5
    DB_info: Database: AceView gene XF690
        WormQTL gene WBGene00006861
        WormFlux gene WBGene00006861
        NDB locus_tag CELE_C24H10.5
        Panther gene CAEEL|WormBase=WBGene00006861|UniProtKB=Q18136
          family PTHR23050
        NCBI gene 192083
        RefSeq protein NM_076463.10
        TREEFAM TREEFAM_ID TF318191
        TrEMBL UniProtAcc Q18136
        UniProt_GCRP UniProtAcc Q18136
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:43 WBPerson1971 Event: Imported: Initial conversion from geneace
        2 26 Sep 2008 15:49:39 WBPerson2970 Name_change: CGC_name: cal-5
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: cal
    Allele (73)
    Legacy_information: are transcript present in larvae adult hermaphrodites.
      [C.elegansII] NMK. Rare 1,3 kb transcript present in larvae, adult hermaphrodites. [Heine and Blumenthal 1986]
    RNASeq_FPKM (74)
    GO_annotation: 00060268
      00114937
    Ortholog (40)
    Paralog (18)
    Structured_description: Concise_description: uvt-2 encodes a protein that contains four EF-hand calcium binding motifs with similarity to human calmodulin; mRNA weakly expressed in L1 through L4 larval stages and in the adult hermaphrodite. Paper_evidence: WBPaper00000873
          Curator_confirmed: WBPerson48
          Date_last_updated: 14 Feb 2005 00:00:00
      Automated_description: Predicted to enable calcium ion binding activity. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: C24H10.5
    Corresponding_transcript: C24H10.5.1
    Other_sequence (14)
    Associated_feature: WBsf653952
      WBsf670504
      WBsf670505
      WBsf1005171
      WBsf1005172
      WBsf1022908
      WBsf237345
      WBsf237346
      WBsf237347
  Experimental_info: RNAi_result: WBRNAi00029160 Inferred_automatically: RNAi_primary
      WBRNAi00041115 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1238
      Expr1018404
      Expr1032906
      Expr1145148
      Expr2009705
      Expr2027944
    Drives_construct: WBCnstr00037884
    Construct_product: WBCnstr00037884
    Microarray_results (16)
    Expression_cluster: WBPaper00031040:TGF-beta_adult_upregulated
      WBPaper00032528:L3_enriched
      WBPaper00032976:dosage_compensated_genes
      WBPaper00033065:clk-1(qm30)_upregulated
      WBPaper00035269:cde-1_regulated
      WBPaper00037055:DAF-16_binding_DNA
      WBPaper00037950:BAG-neuron_blastula-embryo_expressed
      WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
      WBPaper00037950:hypodermis_L1-larva_expressed
      WBPaper00037950:hypodermis_L3-L4-larva_expressed
      WBPaper00037950:intestine_L2-larva_expressed
      WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
      WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
      WBPaper00038168:lin-15B(n744)_downregulated
      WBPaper00040134:nhr-49(RNAi)_regulated_protein
      WBPaper00044037:eat-2_upregulated
      WBPaper00044128:daf-2(e1370)_upregulated
      WBPaper00044128:DietaryRestriction_upregulated
      WBPaper00044246:pgrn-1_ced-1_downregulated
      WBPaper00044316:CH3HgCl_7.5uM_downregulated
      WBPaper00044426:rotenone_24h_upregulated
      WBPaper00044656:tatn-1(qd182)_upregulated
      WBPaper00044736:oscillating_dev_expression
      WBPaper00044786:emr-1(gk119)_downregulated
      WBPaper00045417:128Q-huntingtin_downreglated
      WBPaper00045420:fertilization_downregulated_transcript
      WBPaper00045521:Gender_Neutral
      WBPaper00045571:germline-ablation_upregulated
      WBPaper00046497:B.thuringiensis_0.1mix_downregulated_12h
      WBPaper00046497:B.thuringiensis_0.5mix_downregulated_12h
      WBPaper00047131:daf-2(e1370)_upregulated_hel-1(gk148684)-background
      WBPaper00047131:daf-2(e1370)_upregulated_N2-background
      WBPaper00047132:glp-1(ts)-25C_upregulated
      WBPaper00048988:neuron_expressed
      WBPaper00049018:ham-3(RNAi)_downregulated
      WBPaper00049498:npr-1(ur89)_regulated_3
      WBPaper00049545:jmjd-3.1(+)_downregulated
      WBPaper00049545:sur-5p-jmjd-1.2(+)_downregulated
      WBPaper00049920:Glucose-Diet_upregulated_hyl-2(tm2031)
      WBPaper00049920:Glucose-Diet_upregulated_N2
      WBPaper00050080:rbr-2(tm3141)_downregulated
      WBPaper00050370:dpy-21(e428)_L3_upregulated
      WBPaper00050726:OsmoticStress_regulated_Food
      WBPaper00050801:DAF-16_dauer_regulome
      WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day1-adult
      WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
      WBPaper00050859:upregulated_pgl-1(ct131)_vs_control_day1-adult
      WBPaper00050990:GABAergic-neuron_expressed
      WBPaper00050990:hypodermis_expressed
      WBPaper00050990:intestine_expressed
      WBPaper00050990:NMDA-neuron_expressed
      WBPaper00050990:pharynx_expressed
      WBPaper00050990:seam_expressed
      WBPaper00051039:germline_enriched
      WBPaper00051245:cytoplasm_specific
      WBPaper00051245:epidermis_cytoplasm_expressed
      WBPaper00051245:epidermis_specific
      WBPaper00051352:Long-Term-Association-Memory_downregulated
      WBPaper00052884:emb-4(hc60)_upregulated
      WBPaper00053184:sma-2(rax5)_upregulated
      WBPaper00053184:sma-4(rax3)_upregulated
      WBPaper00053295:lin-22(ot269)_downregulated
      WBPaper00053302:stavudine_24h_regulated
      WBPaper00053388:dauer_regulated_Cluster4
      WBPaper00053599:female_vs_male_downregulated
      WBPaper00053713:Starvation-induced_postdauer_vs_control_upregulated
      WBPaper00053810:daf-2(e1370)_upregulated
      WBPaper00053810:nuo-6(qm200)_upregulated
      WBPaper00053814:15C_downregulated_PY79
      WBPaper00055060:flr-1(RNAi)_downregulated
      WBPaper00055103:thoc-5(wy822)_downregulated
      WBPaper00055354:eat-2(ad1116)_downregulated
      WBPaper00055354:Psora-Allantoin_downregulated
      WBPaper00055354:Psora_downregulated
      WBPaper00055354:Rapamycin-Allantoin_downregulated
      WBPaper00055354:Rapamycin-Metformin_downregulated
      WBPaper00055354:Rapamycin-Rifampicin-Allantoin_downregulated
      WBPaper00055354:Rapamycin-Rifampicin_downregulated
      WBPaper00055354:Rifampicin-Allantoin_downregulated
      WBPaper00055354:Rifampicin-Psora_downregulated
      WBPaper00055354:Rifampicin_downregulated
      WBPaper00055386:daf-2(e1370)_upregulated
      WBPaper00055827:pfd-6(gk493446)_downregulated
      WBPaper00055862:antimycin_damt-1(gk961032)_regulated
      WBPaper00056471:aak-1(tm1944);aak-2(ok524)_upregulated
      WBPaper00056997:nmad-1(ok3133)_upregulated_germline_25C
      WBPaper00057154:HeatShock_downregulated_mRNA
      WBPaper00057154:HeatShock_upregulated_miRNA-target
      WBPaper00057288:Cold_downregulated_protein
      WBPaper00057288:iff-1(RNAi)_upregulated_protein
      WBPaper00058598:sin-3(tm1276)_downregulated
      WBPaper00058691:cfp-1(tm6369)_upregulated
      WBPaper00058691:set-2(bn129)_upregulated
      WBPaper00058725:sftb-1(cer6)_downregulated
      WBPaper00059224:tph-1(mg280)_upregulated
      WBPaper00059254:CSR-1_interacting
      WBPaper00059328:mrps-5(RNAi)_upregulated_mRNA
      WBPaper00059471:EGL-43_interacting
      WBPaper00059664:srbc-48(ac23)_upregulated
      WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
      WBPaper00060399:pqm-1(ok485)_upregulated_CoCl2_6hr
      WBPaper00060683:hlh-11(ko1)_upregulated
      WBPaper00060683:hlh-11(overexpression)_downregulated
      WBPaper00060811:L1_vs_adult_downregulated_neural
      WBPaper00060871:M.humicola-extract_1h_regulated
      WBPaper00061203:sin-3(tm1276)_upregulated
      WBPaper00061203:spr-1(ok2144)_upregulated
      WBPaper00061340:AMsh
      WBPaper00061340:Arcade_cell_anterior_and_posterior
      WBPaper00061340:F_U
      WBPaper00061340:Glia
      WBPaper00061340:hyp4_hyp5_hyp6
      WBPaper00061340:hyp7_AB_lineage
      WBPaper00061340:hyp7_C_lineage
      WBPaper00061340:Parent_of_PVP_and_rect_V
      WBPaper00061340:Posterior_arcade_cell
      WBPaper00061340:Rectal_gland
      WBPaper00061341:28C_48h_downregulated
      WBPaper00061479:hda-1(ne4748)_upregulated
      WBPaper00061527:C18B2.5-haf-4_181
      WBPaper00061651:CAN_enriched
      WBPaper00061651:CEPsh_enriched
      WBPaper00061651:Gonadal_sheath_cell_enriched
      WBPaper00061651:I1_enriched
      WBPaper00061651:PHso_enriched
      WBPaper00061651:Rectal_gland_enriched
      WBPaper00061651:Spermatheca_enriched
      WBPaper00062056:lin-15B(we23)_downregulated
      WBPaper00062056:lin-37(n758)_downregulated
      WBPaper00062056:met-2(n4256)_downregulated
      WBPaper00062159:hda-2(ok1479)_upregulated
      WBPaper00062325:muscle_depleted_coding-RNA
      WBPaper00062354:H.zoospora_6h_regulated
      WBPaper00062669:extracellular-vesicle_protein
      WBPaper00064005:starvation_upregulated_aptf-1(gk794)_protein
      WBPaper00064071:NHR-49_interacting
      WBPaper00064088:Day-1-adult_vs_L4_upregulated_daf-16(mu86);glp-1(e2141)
      WBPaper00064088:Day-1-adult_vs_L4_upregulated_glp-1(e2141)
      WBPaper00064716:paraquat_downregulated
      WBPaper00064727:daf-2(e1370)_upregulated
      WBPaper00065032:PAO1_vs_Delt.Pf4-infection_downregulated
      WBPaper00065158:AFD_depleted
      WBPaper00065373:Cisplatin_downregulated_WT
      WBPaper00065373:sek-1(km4)_downregulated_cisplatin
      WBPaper00065835:Day5_vs_Day1_downregulated
      WBPaper00065835:Day11_vs_Day1_downregulated
      WBPaper00065835:mtH2S-AP39-D0-treatment_upregulated_Day11
      WBPaper00065841:11_2
      WBPaper00065841:33_0
      WBPaper00065841:43_0
      WBPaper00065975:P-body_vs_WholeAnimal_depleted
      WBPaper00065993:glp-1(e2141)_upregulated
      WBPaper00066146:germline-inx-14(RNAi)_upregulated_PA14
      cgc4386_cluster_2_6
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00025141:unc-4::GFP_Expressed_Genes
      WBPaper00031003:0hr_muscle_depleted
      WBPaper00031003:total_muscle_depleted
      WBPaper00040603:tdp-1(lf)_up_vs_N2_FC_1.2
      WBPaper00040963:Q200_up
      WBPaper00041002:HF_3d_2.0mM_Up
      WBPaper00041174:environmental
      WBPaper00041174:genotypic
      WBPaper00041174:genotypic_and_environmental
      WBPaper00041939:control_vs_UVC-EtBr-exposed_51h
      WBPaper00042258:DA1877_upregulated_GravidAdult
      WBPaper00048989:eat-2(ad465)_rapamycin_upregulated
      WBPaper00048989:N2_rapamycin_upregulated
      WBPaper00053236:daf-16(mgDF50)_regulated_Starved
      WBPaper00053236:Starvation_regulated_N2
      [cgc5767]:expression_class_M
      [cgc5767]:expression_class_MD
      [cgc5767]:expression_class_MD_pd(PC32)
      [cgc5767]:expression_class_SM
      [cgc5767]:expression_class_SMD
    Interaction: WBInteraction000566171
  Map_info: Map: X Position: -6.19642
    Positive: Positive_clone: C24H10 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00000873
    WBPaper00038491
    WBPaper00050050
    WBPaper00055090
  Remark: Map X
    Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene