WormBase Tree Display for Gene: WBGene00006698
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| WBGene00006698 | Evidence | Person_evidence | WBPerson71 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | Y116A8C | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | uaf-2 | Person_evidence | WBPerson71 | |||||
| Sequence_name | Y116A8C.35 | ||||||||
| Molecular_name | Y116A8C.35a | ||||||||
| Y116A8C.35a.1 | |||||||||
| CE23341 | |||||||||
| Y116A8C.35b | |||||||||
| CE50583 | |||||||||
| Y116A8C.35a.2 | |||||||||
| Y116A8C.35b.1 | |||||||||
| Other_name | CELE_Y116A8C.35 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | uaf-2 | ||||||||
| DB_info | Database | AceView | gene | 4S62 | |||||
| WormQTL | gene | WBGene00006698 | |||||||
| WormFlux | gene | WBGene00006698 | |||||||
| NDB | locus_tag | CELE_Y116A8C.35 | |||||||
| Panther | gene | CAEEL|EnsemblGenome=WBGene00006698|UniProtKB=Q9U2U0 | |||||||
| family | PTHR12620 | ||||||||
| NCBI | gene | 178489 | |||||||
| RefSeq | protein | NM_001313048.3 | |||||||
| NM_070635.6 | |||||||||
| TrEMBL | UniProtAcc | Q9U2U0 | |||||||
| A0A0K3AXF6 | |||||||||
| UniProt_GCRP | UniProtAcc | Q9U2U0 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:41 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | uaf | ||||||||
| Allele (47) | |||||||||
| Strain | WBStrain00037620 | ||||||||
| WBStrain00051006 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (13) | |||||||||
| Contained_in_operon | CEOP4596 | ||||||||
| Ortholog (38) | |||||||||
| Structured_description | Concise_description | uaf-2 encodes an essential U2AF35 homolog clustered in an operon with cyp-13 (RRM/cyclophilin); UAF-2's sequence is somewhat atypical for U2AF proteins (it lacks an identifiable N-terminal RNA-binding RS domain, while having an glycine-rich C-terminal region). | Paper_evidence | WBPaper00003463 | |||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Enables pre-mRNA 3'-splice site binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to be part of U2AF complex and spliceosomal complex. Is an ortholog of human U2AF1 (U2 small nuclear RNA auxiliary factor 1) and U2AF1L4 (U2 small nuclear RNA auxiliary factor 1 like 4). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y116A8C.35a | |||||||
| Y116A8C.35b | |||||||||
| Corresponding_transcript | Y116A8C.35a.1 | ||||||||
| Y116A8C.35a.2 | |||||||||
| Y116A8C.35b.1 | |||||||||
| Other_sequence (126) | |||||||||
| Associated_feature | WBsf652414 | ||||||||
| WBsf981870 | |||||||||
| WBsf998975 | |||||||||
| WBsf998976 | |||||||||
| WBsf998977 | |||||||||
| WBsf1018949 | |||||||||
| WBsf1018950 | |||||||||
| WBsf1018951 | |||||||||
| Gene_product_binds | WBsf034320 | ||||||||
| Transcription_factor | WBTranscriptionFactor000121 | ||||||||
| Experimental_info | RNAi_result (28) | ||||||||
| Expr_pattern | Expr6892 | ||||||||
| Expr1019162 | |||||||||
| Expr1032781 | |||||||||
| Expr1158964 | |||||||||
| Expr2017694 | |||||||||
| Expr2035832 | |||||||||
| Drives_construct | WBCnstr00004191 | ||||||||
| Microarray_results (17) | |||||||||
| Expression_cluster (94) | |||||||||
| Interaction (208) | |||||||||
| Map_info | Map | IV | Position | 16.1894 | Error | 0.007025 | |||
| Positive | Positive_clone | Y116A8C | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference (15) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
