WormBase Tree Display for Gene: WBGene00006647
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| WBGene00006647 | SMap | S_parent | Sequence | F53G2 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | tsr-1 | Person_evidence | WBPerson297 | |||||
| Sequence_name | F53G2.6 | ||||||||
| Molecular_name | F53G2.6a | ||||||||
| F53G2.6a.1 | |||||||||
| CE52898 | |||||||||
| F53G2.6b | |||||||||
| CE52873 | |||||||||
| F53G2.6b.1 | |||||||||
| Other_name | CELE_F53G2.6 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | tsr-1 | ||||||||
| DB_info | Database | AceView | gene | 2C752 | |||||
| WormQTL | gene | WBGene00006647 | |||||||
| WormFlux | gene | WBGene00006647 | |||||||
| NDB | locus_tag | CELE_F53G2.6 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00006647|UniProtKB=A0A3P6NNQ0 | |||||||
| family | PTHR12363 | ||||||||
| NCBI | gene | 173601 | |||||||
| RefSeq | protein | NM_001383801.1 | |||||||
| NM_001381350.1 | |||||||||
| TrEMBL | UniProtAcc | A0A3P6NNQ0 | |||||||
| A0A3P6P962 | |||||||||
| UniProt_GCRP | UniProtAcc | A0A3P6NNQ0 | |||||||
| OMIM | gene | 610032 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:41 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | tsr | ||||||||
| Allele (516) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00003452 | ||||||||
| 00003453 | |||||||||
| Contained_in_operon | CEOP2070 | ||||||||
| Ortholog (45) | |||||||||
| Paralog | WBGene00011807 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | tsr-1 encodes a homolog of human transportin-SR, a nuclear transport receptor, and affects embryonic viability. | Paper_evidence | WBPaper00004651 | |||||
| WBPaper00005654 | |||||||||
| WBPaper00006395 | |||||||||
| Curator_confirmed | WBPerson48 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to be involved in protein import into nucleus. Predicted to be located in cytoplasm. Human ortholog(s) of this gene implicated in autosomal dominant limb-girdle muscular dystrophy type 2. Is an ortholog of human TNPO3 (transportin 3). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0110304 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:17103) | ||||
| Molecular_info | Corresponding_CDS | F53G2.6a | |||||||
| F53G2.6b | |||||||||
| Corresponding_CDS_history | F53G2.6:wp86 | ||||||||
| F53G2.6:wp127 | |||||||||
| F53G2.6:wp268 | |||||||||
| Corresponding_transcript | F53G2.6a.1 | ||||||||
| F53G2.6b.1 | |||||||||
| Other_sequence | CJC14668_1 | ||||||||
| OF01144 | |||||||||
| Associated_feature | WBsf986953 | ||||||||
| WBsf986954 | |||||||||
| WBsf1011714 | |||||||||
| WBsf1011715 | |||||||||
| Experimental_info | RNAi_result (11) | ||||||||
| Expr_pattern | Expr1028708 | ||||||||
| Expr1032761 | |||||||||
| Expr1151994 | |||||||||
| Expr2017560 | |||||||||
| Expr2035698 | |||||||||
| Drives_construct | WBCnstr00034241 | ||||||||
| Construct_product | WBCnstr00034241 | ||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (72) | |||||||||
| Interaction (41) | |||||||||
| Map_info | Map | II | Position | -12.9848 | Error | 0.10558 | |||
| Positive | Positive_clone | F53G2 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00003988 | ||||||||
| WBPaper00031613 | |||||||||
| WBPaper00032289 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00048493 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
