WormBase Tree Display for Gene: WBGene00006643
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| WBGene00006643 | SMap | S_parent | Sequence | C02F12 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | tsp-17 | Person_evidence | WBPerson522 | |||||
| Sequence_name | C02F12.1 | ||||||||
| Molecular_name (15) | |||||||||
| Other_name | CELE_C02F12.1 | Accession_evidence | NDB | BX284606 | |||||
| Public_name | tsp-17 | ||||||||
| DB_info | Database | AceView | gene | XE303 | |||||
| WormQTL | gene | WBGene00006643 | |||||||
| WormFlux | gene | WBGene00006643 | |||||||
| NDB | locus_tag | CELE_C02F12.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00006643|UniProtKB=Q11098 | |||||||
| family | PTHR19282 | ||||||||
| NCBI | gene | 192067 | |||||||
| RefSeq | protein | NM_001313386.3 | |||||||
| NM_001383547.2 | |||||||||
| NM_001313384.4 | |||||||||
| NM_001313385.3 | |||||||||
| NM_001136448.4 | |||||||||
| SwissProt | UniProtAcc | Q11098 | |||||||
| UniProt_GCRP | UniProtAcc | Q11098 | |||||||
| OMIM | gene | 300096 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:41 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | tsp | ||||||||
| Allele (50) | |||||||||
| Strain | WBStrain00034688 | ||||||||
| WBStrain00034689 | |||||||||
| WBStrain00034690 | |||||||||
| WBStrain00034691 | |||||||||
| WBStrain00034693 | |||||||||
| WBStrain00034695 | |||||||||
| WBStrain00034696 | |||||||||
| WBStrain00034670 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (15) | |||||||||
| Ortholog (35) | |||||||||
| Paralog (20) | |||||||||
| Structured_description | Automated_description | Enables D2 dopamine receptor binding activity. Involved in cellular response to paraquat; negative regulation of response to oxidative stress; and regulation of dopamine uptake involved in synaptic transmission. Located in neuron projection; perinuclear region of cytoplasm; and plasma membrane. Expressed in several structures, including NSM; body wall musculature; dopaminergic neurons; hermaphrodite gonad; and vulva. Used to study Parkinson's disease. Human ortholog(s) of this gene implicated in non-syndromic X-linked intellectual disability 58. Is an ortholog of human TSPAN3 (tetraspanin 3) and TSPAN7 (tetraspanin 7). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Experimental_model | DOID:1289 | Homo sapiens | Paper_evidence | WBPaper00046082 | ||||
| Curator_confirmed | WBPerson324 | ||||||||
| Date_last_updated | 04 Feb 2015 00:00:00 | ||||||||
| DOID:14330 | Homo sapiens | Paper_evidence | WBPaper00053621 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| Date_last_updated | 04 Mar 2019 00:00:00 | ||||||||
| Potential_model | DOID:0112024 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:11854) | |||||
| Models_disease_in_annotation | WBDOannot00000344 | ||||||||
| Models_disease_asserted | WBDOannot00000638 | ||||||||
| Molecular_info | Corresponding_CDS | C02F12.1a | |||||||
| C02F12.1b | |||||||||
| C02F12.1c | |||||||||
| C02F12.1d | |||||||||
| C02F12.1e | |||||||||
| Corresponding_CDS_history | C02F12.1:wp107 | ||||||||
| C02F12.1:wp192 | |||||||||
| C02F12.1a:wp246 | |||||||||
| C02F12.1b:wp225 | |||||||||
| Corresponding_transcript | C02F12.1a.1 | ||||||||
| C02F12.1b.1 | |||||||||
| C02F12.1c.1 | |||||||||
| C02F12.1d.1 | |||||||||
| C02F12.1e.1 | |||||||||
| Other_sequence (21) | |||||||||
| Associated_feature | WBsf662619 | ||||||||
| WBsf1004692 | |||||||||
| WBsf1004693 | |||||||||
| WBsf235515 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00039430 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00010002 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00028350 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr12508 | ||||||||
| Expr1013023 | |||||||||
| Expr1032759 | |||||||||
| Expr1143544 | |||||||||
| Expr2017546 | |||||||||
| Expr2035684 | |||||||||
| Drives_construct | WBCnstr00021630 | ||||||||
| WBCnstr00034244 | |||||||||
| Construct_product | WBCnstr00021630 | ||||||||
| WBCnstr00034244 | |||||||||
| Microarray_results (26) | |||||||||
| Expression_cluster (129) | |||||||||
| Interaction (35) | |||||||||
| Map_info | Map | X | Position | -9.80493 | Error | 0.009623 | |||
| Positive | Positive_clone | C02F12 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00046082 | ||||||||
| WBPaper00047946 | |||||||||
| WBPaper00053621 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
