WormBase Tree Display for Gene: WBGene00006642

WBGene00006642 SMap: S_parent: Sequence: F01E11
  Identity: Version: 2
    Name: CGC_name: tsp-16 Person_evidence: WBPerson522
      Sequence_name: F01E11.4
      Molecular_name: F01E11.4
        F01E11.4.1
        CE47141
      Other_name: CELE_F01E11.4 Accession_evidence: NDB BX284606
      Public_name: tsp-16
    DB_info: Database: AceView gene XH612
        WormQTL gene WBGene00006642
        WormFlux gene WBGene00006642
        NDB locus_tag CELE_F01E11.4
        Panther gene CAEEL|WormBase=WBGene00006642|UniProtKB=Q19083
          family PTHR19282
        NCBI gene 192066
        RefSeq protein NM_076782.4
        TrEMBL UniProtAcc Q19083
        UniProt_GCRP UniProtAcc Q19083
    Species: Caenorhabditis elegans
    History: Version_change (2)
      Split_into: WBGene00303051
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: tsp
    Allele (37)
    RNASeq_FPKM (74)
    GO_annotation: 00063416
      00063417
      00114533
    Ortholog: WBGene00051396 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00032183 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00151662 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00134251 Caenorhabditis japonica From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00096403 Pristionchus pacificus From_analysis: Inparanoid_8
      CBOVI.g3724 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g11902 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g21107 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g15033 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g2781 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g20628 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g5598 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g9492 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g7714 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g2163 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cni-tsp-16 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp5_scaffold_00029.g1641 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_00256 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_024689 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g07376 Oscheius tipulae From_analysis: WormBase-Compara
      Sp34_X0198500 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrX_pilon.g19336 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00107435 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00287200 Trichuris muris From_analysis: WormBase-Compara
      FB:FBgn0020372 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            SonicParanoid
      FB:FBgn0036769 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            PhylomeDB
      HGNC:12578 Homo sapiens From_analysis: EnsEMBL-Compara
            OrthoFinder
      MGI:98912 Mus musculus From_analysis: EnsEMBL-Compara
            OrthoFinder
      RGD:1307806 Rattus norvegicus From_analysis: EnsEMBL-Compara
            OrthoFinder
    Paralog (20)
    Structured_description: Automated_description: Predicted to be located in membrane. Is an ortholog of human UPK1B (uroplakin 1B). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F01E11.4
    Corresponding_CDS_history: F01E11.4:wp230
      F01E11.4a:wp264
      F01E11.4b:wp264
    Corresponding_transcript: F01E11.4.1
    Other_sequence: FD515423.1
      CSC01824_1
    Associated_feature: WBsf670673
  Experimental_info: RNAi_result: WBRNAi00043738 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1026533
      Expr1147723
      Expr2017545
      Expr2035683
    Drives_construct: WBCnstr00034245
    Construct_product: WBCnstr00034245
    Microarray_results (15)
    Expression_cluster (133)
    Interaction: WBInteraction000206516
      WBInteraction000345967
  Map_info: Map: X Position: -1.92965
    Positive: Positive_clone: F01E11 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene