WormBase Tree Display for Gene: WBGene00006635

WBGene00006635 SMap: S_parent: Sequence: C25G6
  Identity: Version: 1
    Name: CGC_name: tsp-9 Person_evidence: WBPerson522
      Sequence_name: C25G6.2
      Molecular_name: C25G6.2
        C25G6.2.1
        CE04083
      Other_name: CELE_C25G6.2 Accession_evidence: NDB BX284606
      Public_name: tsp-9
    DB_info: Database (11)
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:41 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: tsp
    Allele (28)
    RNASeq_FPKM (74)
    GO_annotation: 00060384
      00060385
      00060386
      00114526
    Ortholog: WBGene00060166 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00029918 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00161302 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00108296 Pristionchus pacificus From_analysis: OMA
            Inparanoid_8
      WBGene00222638 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g3901 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g12454 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g803 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP31.g6102 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP38.g18997 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP40.g11194 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00071.g3391 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-tsp-9 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold514.g2609 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00825.g15831 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_03142 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_022268 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g00444 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g10362 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_X0009900 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrX_pilon.g18402 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00243177 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00277806 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00262099 Strongyloides ratti From_analysis: WormBase-Compara
      FB:FBgn0033139 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            OMA
      FB:FBgn0042086 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            OMA
      FB:FBgn0050160 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            OMA
      ZFIN:ZDB-GENE-000831-5 Danio rerio From_analysis: EnsEMBL-Compara
            OrthoFinder
            SonicParanoid
      ZFIN:ZDB-GENE-030131-1175 Danio rerio From_analysis: Inparanoid
            OrthoFinder
            OrthoInspector
            SonicParanoid
      ZFIN:ZDB-GENE-050522-511 Danio rerio From_analysis: Inparanoid
            OrthoFinder
            OrthoInspector
            SonicParanoid
      ZFIN:ZDB-GENE-040808-52 Danio rerio From_analysis: EnsEMBL-Compara
            OMA
            OrthoFinder
            SonicParanoid
      HGNC:1701 Homo sapiens From_analysis: EnsEMBL-Compara
            OMA
            OrthoFinder
            OrthoInspector
            SonicParanoid
      MGI:1096398 Mus musculus From_analysis: EnsEMBL-Compara
            OMA
            OrthoFinder
            SonicParanoid
      RGD:2315 Rattus norvegicus From_analysis: EnsEMBL-Compara
            OrthoFinder
            SonicParanoid
      RGD:620982 Rattus norvegicus From_analysis: OMA
            OrthoFinder
            SonicParanoid
    Paralog (20)
    Structured_description: Automated_description: Predicted to be located in membrane. Human ortholog(s) of this gene implicated in common variable immunodeficiency 6. Is an ortholog of human CD81 (CD81 molecule). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Disease_info: Potential_model: DOID:0081149 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:1701)
  Molecular_info: Corresponding_CDS: C25G6.2
    Corresponding_transcript: C25G6.2.1
    Other_sequence (28)
    Associated_feature (11)
  Experimental_info: RNAi_result: WBRNAi00029207 Inferred_automatically: RNAi_primary
      WBRNAi00011185 Inferred_automatically: RNAi_primary
      WBRNAi00011187 Inferred_automatically: RNAi_primary
      WBRNAi00041219 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1011481
      Expr1032754
      Expr1145255
      Expr2017559
      Expr2035697
    Drives_construct: WBCnstr00034250
    Construct_product: WBCnstr00034250
    Microarray_results (22)
    Expression_cluster (113)
    Interaction: WBInteraction000279378
      WBInteraction000339888
      WBInteraction000340249
      WBInteraction000344696
      WBInteraction000349971
      WBInteraction000377986
      WBInteraction000440448
  Map_info: Map: X Position: -18.476 Error: 0.00321
    Positive: Positive_clone: C25G6 Inferred_automatically: From sequence, transcript, pseudogene data
    Mapping_data: Multi_point: 5551
    Pseudo_map_position
  Reference: WBPaper00038491
    WBPaper00055090
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene