WormBase Tree Display for Gene: WBGene00006603
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| WBGene00006603 | SMap | S_parent | Sequence | F19H8 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | tps-2 | |||||||
| Sequence_name | F19H8.1 | ||||||||
| Molecular_name | F19H8.1a | ||||||||
| F19H8.1a.1 | |||||||||
| CE37507 | |||||||||
| F19H8.1b | |||||||||
| CE48622 | |||||||||
| F19H8.1b.1 | |||||||||
| Other_name | CELE_F19H8.1 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | tps-2 | ||||||||
| DB_info | Database (12) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:41 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | tps | ||||||||
| Allele (165) | |||||||||
| Strain | WBStrain00031474 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (12) | |||||||||
| Ortholog (37) | |||||||||
| Paralog | WBGene00001649 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Panther | |||||||||
| WBGene00006602 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | tps-2 encodes one of two trehalose-6-phosphate synthase proteins in C. elegans, and RNAi of both enzymes leads to a more than 90% reduction decrease in trehalose levels, but does not appear to affect viability or development; the tps-2 mRNA is expressed throughout development. | Paper_evidence | WBPaper00006140 | |||||
| WBPaper00017649 | |||||||||
| WBPaper00019120 | |||||||||
| Curator_confirmed | WBPerson48 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity. Predicted to contribute to trehalose-phosphatase activity. Predicted to be involved in trehalose biosynthetic process and trehalose metabolism in response to stress. Predicted to be part of alpha,alpha-trehalose-phosphate synthase complex (UDP-forming). Expressed in hypodermis. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F19H8.1a | |||||||
| F19H8.1b | |||||||||
| Corresponding_CDS_history | F19H8.1:wp91 | ||||||||
| F19H8.1:wp132 | |||||||||
| Corresponding_transcript | F19H8.1a.1 | ||||||||
| F19H8.1b.1 | |||||||||
| Other_sequence (111) | |||||||||
| Associated_feature (16) | |||||||||
| Experimental_info | RNAi_result (12) | ||||||||
| Expr_pattern (12) | |||||||||
| Drives_construct | WBCnstr00003736 | ||||||||
| WBCnstr00015345 | |||||||||
| WBCnstr00015346 | |||||||||
| WBCnstr00034276 | |||||||||
| WBCnstr00042530 | |||||||||
| Construct_product | WBCnstr00034276 | ||||||||
| Microarray_results (23) | |||||||||
| Expression_cluster (174) | |||||||||
| Interaction (122) | |||||||||
| Map_info | Map | II | Position | 23.148 | Error | 0.005869 | |||
| Positive | Positive_clone | F19H8 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Mapping_data | Multi_point | 4735 | |||||||
| 5024 | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00006140 | ||||||||
| WBPaper00017649 | |||||||||
| WBPaper00019120 | |||||||||
| WBPaper00024542 | |||||||||
| WBPaper00025231 | |||||||||
| WBPaper00026837 | |||||||||
| WBPaper00033843 | |||||||||
| WBPaper00036280 | |||||||||
| WBPaper00036530 | |||||||||
| WBPaper00046159 | |||||||||
| WBPaper00049227 | |||||||||
| WBPaper00051763 | |||||||||
| WBPaper00053236 | |||||||||
| WBPaper00057153 | |||||||||
| WBPaper00061131 | |||||||||
| WBPaper00061238 | |||||||||
| WBPaper00065331 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
