WormBase Tree Display for Gene: WBGene00006570
expand all nodes | collapse all nodes | view schema
WBGene00006570 | SMap | S_parent | Sequence | F39G3 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 1 | |||||||
Name | CGC_name | tig-2 | Person_evidence | WBPerson465 | |||||
Sequence_name | F39G3.8 | ||||||||
Molecular_name | F39G3.8 | ||||||||
F39G3.8.1 | |||||||||
CE10126 | |||||||||
Other_name | CELE_F39G3.8 | Accession_evidence | NDB | BX284605 | |||||
Public_name | tig-2 | ||||||||
DB_info | Database | AceView | gene | 5F206 | |||||
WormQTL | gene | WBGene00006570 | |||||||
WormFlux | gene | WBGene00006570 | |||||||
NDB | locus_tag | CELE_F39G3.8 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00006570|UniProtKB=O16273 | |||||||
family | PTHR11848 | ||||||||
NCBI | gene | 178864 | |||||||
RefSeq | protein | NM_071870.6 | |||||||
TrEMBL | UniProtAcc | O16273 | |||||||
UniProt_GCRP | UniProtAcc | O16273 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:41 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | tig | ||||||||
Allele (55) | |||||||||
Strain | WBStrain00033105 | ||||||||
WBStrain00033151 | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00027628 | ||||||||
00027629 | |||||||||
00027630 | |||||||||
00027631 | |||||||||
00027632 | |||||||||
00027633 | |||||||||
00027634 | |||||||||
00114364 | |||||||||
00114365 | |||||||||
Ortholog (54) | |||||||||
Paralog | WBGene00000903 | Caenorhabditis elegans | From_analysis | Panther | |||||
WormBase-Compara | |||||||||
WBGene00000936 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WormBase-Compara | |||||||||
WBGene00006852 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WormBase-Compara | |||||||||
WBGene00021594 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WormBase-Compara | |||||||||
Structured_description | Concise_description | tig-2 (like dbl-1, daf-7, and unc-129) encodes a TGF-beta-like protein. | Paper_evidence | WBPaper00003859 | |||||
Curator_confirmed | WBPerson567 | ||||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
Automated_description | Predicted to enable cytokine activity. Predicted to be involved in signal transduction. Predicted to be located in extracellular space. Expressed in cholinergic neurons; pharyngeal muscle cell; and touch receptor neurons. Human ortholog(s) of this gene implicated in breast cancer; renal cell carcinoma; and reproductive organ cancer (multiple). Is an ortholog of several human genes including BMP5 (bone morphogenetic protein 5); BMP7 (bone morphogenetic protein 7); and BMP8B (bone morphogenetic protein 8b). | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Disease_info | Potential_model | DOID:4450 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:1074) | ||||
DOID:10283 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:1074) | ||||||
DOID:4001 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:1074) | ||||||
DOID:1612 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:1074) | ||||||
Molecular_info | Corresponding_CDS | F39G3.8 | |||||||
Corresponding_transcript | F39G3.8.1 | ||||||||
Other_sequence | CJC09002_1 | ||||||||
JI173018.1 | |||||||||
Hbac_isotig01669 | |||||||||
Associated_feature | WBsf652586 | ||||||||
WBsf652587 | |||||||||
WBsf233605 | |||||||||
Experimental_info | RNAi_result | WBRNAi00046793 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00067134 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00067834 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00014614 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00031993 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00075943 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Chronogram1919 | ||||||||
Expr4848 | |||||||||
Expr8199 | |||||||||
Expr1023616 | |||||||||
Expr1150668 | |||||||||
Expr2017398 | |||||||||
Expr2035537 | |||||||||
Drives_construct | WBCnstr00009862 | ||||||||
WBCnstr00012276 | |||||||||
WBCnstr00013174 | |||||||||
WBCnstr00034297 | |||||||||
Construct_product | WBCnstr00034297 | ||||||||
Microarray_results (18) | |||||||||
Expression_cluster (141) | |||||||||
Interaction | WBInteraction000006588 | ||||||||
WBInteraction000007288 | |||||||||
WBInteraction000578883 | |||||||||
WBProcess | WBbiopr:00000025 | ||||||||
Map_info | Map | V | Position | -4.49388 | Error | 0.037263 | |||
Positive | Positive_clone | F39G3 | Inferred_automatically | From CDS info | |||||
From sequence, transcript, pseudogene data | |||||||||
Pseudo_map_position | |||||||||
Reference (19) | |||||||||
Remark | Sequence connection from [Padgett RW] | ||||||||
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
Method | Gene |