WormBase Tree Display for Gene: WBGene00006559
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WBGene00006559 | Evidence | Author_evidence | Woollard AS | ||||||
---|---|---|---|---|---|---|---|---|---|
SMap | S_parent | Sequence | Y73F8A | ||||||
Identity | Version | 1 | |||||||
Name | CGC_name | tbx-40 | |||||||
Sequence_name | Y73F8A.17 | ||||||||
Molecular_name | Y73F8A.17 | ||||||||
Y73F8A.17.1 | |||||||||
CE22986 | |||||||||
Other_name | CELE_Y73F8A.17 | Accession_evidence | NDB | BX284604 | |||||
Public_name | tbx-40 | ||||||||
DB_info | Database | AceView | gene | 4Q90 | |||||
WormQTL | gene | WBGene00006559 | |||||||
WormFlux | gene | WBGene00006559 | |||||||
NDB | locus_tag | CELE_Y73F8A.17 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00006559|UniProtKB=Q9NA55 | |||||||
family | PTHR11267 | ||||||||
NCBI | gene | 190679 | |||||||
RefSeq | protein | NM_070451.3 | |||||||
SwissProt | UniProtAcc | Q9NA55 | |||||||
UniProt_GCRP | UniProtAcc | Q9NA55 | |||||||
OMIM | gene | 300307 | |||||||
601719 | |||||||||
602427 | |||||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:41 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | tbx | ||||||||
Allele (48) | |||||||||
Strain | WBStrain00051468 | ||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (13) | |||||||||
Ortholog (53) | |||||||||
Paralog (21) | |||||||||
Structured_description | Automated_description | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in cell fate specification and regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Expressed in phasmid neurons. Human ortholog(s) of this gene implicated in Abruzzo-Erickson syndrome; X-linked cleft palate with or without ankyloglossia; and bone disease (multiple). Is an ortholog of several human genes including TBX15 (T-box transcription factor 15); TBX4 (T-box transcription factor 4); and TBX6 (T-box transcription factor 6). | Paper_evidence | WBPaper00065943 | |||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Disease_info | Potential_model | DOID:0111382 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:11603) | ||||
DOID:381 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:11603) | ||||||
DOID:0111826 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:11600) | ||||||
DOID:0112363 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:11605) | ||||||
DOID:674 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:11600) | ||||||
DOID:0060613 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:11600) | ||||||
Molecular_info | Corresponding_CDS | Y73F8A.17 | |||||||
Corresponding_transcript | Y73F8A.17.1 | ||||||||
Associated_feature | WBsf978888 | ||||||||
WBsf231247 | |||||||||
Transcription_factor | WBTranscriptionFactor000484 | ||||||||
Experimental_info | RNAi_result | WBRNAi00037817 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00058383 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr7742 | ||||||||
Expr1161803 | |||||||||
Expr2017355 | |||||||||
Expr2035492 | |||||||||
Drives_construct | WBCnstr00012887 | ||||||||
Microarray_results (13) | |||||||||
Expression_cluster (64) | |||||||||
Interaction | WBInteraction000533588 | ||||||||
WBInteraction000534465 | |||||||||
Map_info | Map | IV | Position | 13.5335 | Error | 0.014894 | |||
Positive | Positive_clone | Y73F8A | Inferred_automatically | From CDS info | |||||
From sequence, transcript, pseudogene data | |||||||||
Pseudo_map_position | |||||||||
Reference | WBPaper00024194 | ||||||||
WBPaper00027309 | |||||||||
WBPaper00055090 | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |