WormBase Tree Display for Gene: WBGene00006558
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| WBGene00006558 | Evidence | Author_evidence | Woollard AS | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | Y73F8A | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | tbx-39 | |||||||
| Sequence_name | Y73F8A.16 | ||||||||
| Molecular_name | Y73F8A.16 | ||||||||
| Y73F8A.16.1 | |||||||||
| CE22985 | |||||||||
| Other_name | CELE_Y73F8A.16 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | tbx-39 | ||||||||
| DB_info | Database | AceView | gene | 4Q89 | |||||
| WormQTL | gene | WBGene00006558 | |||||||
| WormFlux | gene | WBGene00006558 | |||||||
| NDB | locus_tag | CELE_Y73F8A.16 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00006558|UniProtKB=Q9NA56 | |||||||
| family | PTHR11267 | ||||||||
| NCBI | gene | 190678 | |||||||
| RefSeq | protein | NM_070450.1 | |||||||
| SwissProt | UniProtAcc | Q9NA56 | |||||||
| UniProt_GCRP | UniProtAcc | Q9NA56 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:41 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | tbx | ||||||||
| Allele (40) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (14) | |||||||||
| Ortholog (20) | |||||||||
| Paralog (21) | |||||||||
| Structured_description | Automated_description | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in cell fate specification and regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Expressed in head muscle; head neurons; intestine; tail neurons; and ventral nerve cord. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y73F8A.16 | |||||||
| Corresponding_transcript | Y73F8A.16.1 | ||||||||
| Associated_feature | WBsf978810 | ||||||||
| WBsf998711 | |||||||||
| WBsf1018752 | |||||||||
| Transcription_factor | WBTranscriptionFactor000658 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00058381 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00037816 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr7741 | ||||||||
| Expr1021584 | |||||||||
| Expr1161802 | |||||||||
| Expr2017354 | |||||||||
| Expr2035491 | |||||||||
| Drives_construct | WBCnstr00012886 | ||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (70) | |||||||||
| Interaction (26) | |||||||||
| Map_info | Map | IV | Position | 13.4678 | Error | 0.009662 | |||
| Positive | Positive_clone | Y73F8A | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00024194 | ||||||||
| WBPaper00027309 | |||||||||
| WBPaper00031805 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
