WormBase Tree Display for Gene: WBGene00006489
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| WBGene00006489 | SMap | S_parent | Sequence | ZK856 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | |||||||
| Name | CGC_name | zhit-3 | Person_evidence | WBPerson260 | |||||
| Sequence_name | ZK856.9 | ||||||||
| Molecular_name | ZK856.9 | ||||||||
| ZK856.9.1 | |||||||||
| CE29017 | |||||||||
| Other_name | tag-143 | Person_evidence | WBPerson201 | ||||||
| CELE_ZK856.9 | Accession_evidence | NDB | BX284605 | ||||||
| Public_name | zhit-3 | ||||||||
| DB_info | Database | AceView | gene | 5K692 | |||||
| WormQTL | gene | WBGene00006489 | |||||||
| WormFlux | gene | WBGene00006489 | |||||||
| NDB | locus_tag | CELE_ZK856.9 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00006489|UniProtKB=Q23644 | |||||||
| family | PTHR13483 | ||||||||
| NCBI | gene | 179420 | |||||||
| RefSeq | protein | NM_073226.5 | |||||||
| TREEFAM | TREEFAM_ID | TF315656 | |||||||
| TrEMBL | UniProtAcc | Q23644 | |||||||
| UniProt_GCRP | UniProtAcc | Q23644 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:40 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| 2 | 04 Apr 2005 15:40:22 | WBPerson2970 | Event | Acquires_merge | WBGene00014110 | ||||
| 3 | 30 Sep 2011 14:28:20 | WBPerson2970 | Name_change | CGC_name | zhit-3 | ||||
| Other_name | tag-143 | ||||||||
| Acquires_merge | WBGene00014110 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | zhit | ||||||||
| Allele (33) | |||||||||
| Strain | WBStrain00035544 | ||||||||
| WBStrain00034741 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00079182 | ||||||||
| 00079183 | |||||||||
| 00079184 | |||||||||
| 00079185 | |||||||||
| 00079186 | |||||||||
| 00079187 | |||||||||
| 00079188 | |||||||||
| 00079189 | |||||||||
| Contained_in_operon | CEOP5248 | ||||||||
| Ortholog (32) | |||||||||
| Structured_description | Automated_description | Predicted to be involved in box C/D snoRNP assembly; maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); and snoRNA localization. Located in nucleus. Is an ortholog of human ZNHIT6 (zinc finger HIT-type containing 6). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | ZK856.9 | |||||||
| Corresponding_CDS_history | ZK856.9:wp60 | ||||||||
| Corresponding_transcript | ZK856.9.1 | ||||||||
| Other_sequence (14) | |||||||||
| Associated_feature | WBsf1001073 | ||||||||
| WBsf1020277 | |||||||||
| WBsf234350 | |||||||||
| Transcription_factor | WBTranscriptionFactor000701 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00081790 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00081828 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00059780 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00081857 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr9511 | ||||||||
| Expr1026144 | |||||||||
| Expr1032652 | |||||||||
| Expr1163209 | |||||||||
| Expr1200193 | |||||||||
| Expr2018134 | |||||||||
| Expr2036271 | |||||||||
| Drives_construct | WBCnstr00037896 | ||||||||
| Construct_product | WBCnstr00014076 | ||||||||
| WBCnstr00037896 | |||||||||
| Microarray_results (16) | |||||||||
| Expression_cluster (96) | |||||||||
| Interaction (55) | |||||||||
| Map_info | Map | V | Position | 2.36395 | Error | 0.00689 | |||
| Positive | Positive_clone | ZK856 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 5312 | |||||||
| 4931 | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00027309 | ||||||||
| WBPaper00027634 | |||||||||
| WBPaper00028564 | |||||||||
| WBPaper00038444 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00060613 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
