WormBase Tree Display for Gene: WBGene00006404
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| WBGene00006404 | Evidence | CGC_data_submission | |||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | CHROMOSOME_II | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | tag-10 | Person_evidence | WBPerson201 | |||||
| Sequence_name | C31C9.1 | ||||||||
| Molecular_name (13) | |||||||||
| Other_name | CELE_C31C9.1 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | tag-10 | ||||||||
| DB_info | Database | AceView | gene | 2N925 | |||||
| WormQTL | gene | WBGene00006404 | |||||||
| WormFlux | gene | WBGene00006404 | |||||||
| NDB | locus_tag | CELE_C31C9.1 | |||||||
| NCBI | gene | 175011 | |||||||
| RefSeq | protein | NM_001322757.3 | |||||||
| NM_001322756.4 | |||||||||
| NM_064466.6 | |||||||||
| NM_182157.5 | |||||||||
| TREEFAM | TREEFAM_ID | TF315748 | |||||||
| TrEMBL | UniProtAcc | G5EG67 | |||||||
| G5EER7 | |||||||||
| A0A131MBC3 | |||||||||
| A0A131MCY4 | |||||||||
| UniProt_GCRP | UniProtAcc | G5EG67 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:40 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | tag | ||||||||
| Allele (110) | |||||||||
| Strain | WBStrain00031344 | ||||||||
| WBStrain00031493 | |||||||||
| WBStrain00035545 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00019624 | ||||||||
| Ortholog (30) | |||||||||
| Structured_description | Concise_description | tag-10 encodes, by alternative splicing, two nearly identical proteins; TAG-10 proteins are putatively secreted, with an N-terminal signal sequence and four C-terminal WD40 repeats; TAG-10 proteins are orthologous to the GA1 apical gut membrane polyprotein of Haemonchus contortus, and more distantly similar to the periplasmic TolB colicin receptor subunit of E. coli. | Paper_evidence | WBPaper00028536 | |||||
| WBPaper00028537 | |||||||||
| WBPaper00028538 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 02 Oct 2006 00:00:00 | ||||||||
| Automated_description | Located in membrane raft. Expressed in amphid neurons. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C31C9.1a | |||||||
| C31C9.1b | |||||||||
| C31C9.1c | |||||||||
| C31C9.1d | |||||||||
| Corresponding_CDS_history | C31C9.1:wp91 | ||||||||
| Corresponding_transcript | C31C9.1a.1 | ||||||||
| C31C9.1a.2 | |||||||||
| C31C9.1b.1 | |||||||||
| C31C9.1c.1 | |||||||||
| C31C9.1d.1 | |||||||||
| Other_sequence (40) | |||||||||
| Associated_feature | WBsf644809 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00041603 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00098171 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00041602 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00029381 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr9615 | ||||||||
| Expr1017656 | |||||||||
| Expr1032596 | |||||||||
| Expr1145628 | |||||||||
| Expr2017222 | |||||||||
| Expr2035358 | |||||||||
| Drives_construct | WBCnstr00014176 | ||||||||
| WBCnstr00034369 | |||||||||
| Construct_product | WBCnstr00034369 | ||||||||
| Microarray_results (24) | |||||||||
| Expression_cluster (256) | |||||||||
| Interaction (21) | |||||||||
| Map_info | Map | II | Position | 18.8668 | Error | 0.015847 | |||
| Positive | Positive_clone | C31C9 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 4469 | |||||||
| 4842 | |||||||||
| 4806 | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00028482 | ||||||||
| WBPaper00037777 | |||||||||
| Remark | Gene name created from parsing 'genotype' field from CGC strain information | CGC_data_submission | |||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
