WormBase Tree Display for Gene: WBGene00006387

WBGene00006387 SMap: S_parent: Sequence: W09B6
  Identity: Version: 1
    Name: CGC_name: taf-6.1
      Sequence_name: W09B6.2
      Molecular_name (15)
      Other_name: CELE_W09B6.2 Accession_evidence: NDB BX284602
      Public_name: taf-6.1
    DB_info: Database: AceView gene 2B421
        WormQTL gene WBGene00006387
        WormFlux gene WBGene00006387
        NDB locus_tag CELE_W09B6.2
        Panther gene CAEEL|WormBase=WBGene00006387|UniProtKB=Q9GZI6
          family PTHR10221
        NCBI gene 173498
        RefSeq protein NM_061518.9
            NM_001318308.3
            NM_001318307.3
            NM_001318305.3
            NM_001318306.3
        TrEMBL UniProtAcc A0A0S4XRY0
            A0A0S4XR63
            A0A0S4XR87
            Q9GZI6
            A0A0S4XRA5
        UniProt_GCRP UniProtAcc Q9GZI6
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:40 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: taf
    Allele (105)
    RNASeq_FPKM (74)
    GO_annotation (13)
    Contained_in_operon: CEOP2040
    Ortholog (36)
    Paralog: WBGene00021363 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
    Structured_description: Automated_description: Predicted to enable transcription coactivator activity. Predicted to contribute to RNA polymerase II general transcription initiation factor activity. Predicted to be involved in RNA polymerase II preinitiation complex assembly. Predicted to be located in nucleus. Predicted to be part of transcription factor TFIID complex. Is an ortholog of human TAF6 (TATA-box binding protein associated factor 6). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: W09B6.2a
      W09B6.2b
      W09B6.2c
      W09B6.2d
      W09B6.2e
    Corresponding_transcript: W09B6.2a.1
      W09B6.2b.1
      W09B6.2c.1
      W09B6.2d.1
      W09B6.2e.1
    Other_sequence: Hbac_isotig00814
      Dviv_isotig16429
      Dviv_isotig16428
      JI168748.1
      CBC09024_1
      CR05307
      CRC04877_1
    Associated_feature: WBsf986579
      WBsf986580
      WBsf1011489
      WBsf1011490
      WBsf220824
      WBsf220825
    Transcription_factor: WBTranscriptionFactor000699
  Experimental_info: RNAi_result: WBRNAi00019736 Inferred_automatically: RNAi_primary
      WBRNAi00113015 Inferred_automatically: RNAi_primary
      WBRNAi00055012 Inferred_automatically: RNAi_primary
      WBRNAi00061906 Inferred_automatically: RNAi_primary
      WBRNAi00113245 Inferred_automatically: RNAi_primary
      WBRNAi00077380 Inferred_automatically: RNAi_primary
      WBRNAi00061905 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1014800
      Expr1032584
      Expr1158545
      Expr2017216
      Expr2035352
    Microarray_results (20)
    Expression_cluster (103)
    Interaction: WBInteraction000034702
      WBInteraction000034897
      WBInteraction000035847
      WBInteraction000035848
      WBInteraction000035849
      WBInteraction000036816
      WBInteraction000036817
      WBInteraction000038073
      WBInteraction000038698
      WBInteraction000038765
      WBInteraction000039142
      WBInteraction000039715
      WBInteraction000039718
      WBInteraction000040075
      WBInteraction000040076
      WBInteraction000040077
      WBInteraction000042873
      WBInteraction000042879
      WBInteraction000042880
      WBInteraction000042881
      WBInteraction000044115
      WBInteraction000044149
      WBInteraction000044151
      WBInteraction000046282
      WBInteraction000046283
      WBInteraction000048036
      WBInteraction000048037
      WBInteraction000050404
      WBInteraction000050405
      WBInteraction000102984
      WBInteraction000103531
      WBInteraction000103653
      WBInteraction000105086
      WBInteraction000105622
      WBInteraction000105841
      WBInteraction000106192
      WBInteraction000106941
      WBInteraction000106942
      WBInteraction000108946
      WBInteraction000108983
      WBInteraction000108987
      WBInteraction000108996
      WBInteraction000109002
      WBInteraction000109015
      WBInteraction000109020
      WBInteraction000119843
      WBInteraction000125038
      WBInteraction000127644
      WBInteraction000128745
      WBInteraction000130462
      WBInteraction000130463
      WBInteraction000130464
      WBInteraction000130465
      WBInteraction000130466
      WBInteraction000130467
      WBInteraction000130468
      WBInteraction000130469
      WBInteraction000130470
      WBInteraction000130471
      WBInteraction000130588
      WBInteraction000130742
      WBInteraction000130894
      WBInteraction000131253
      WBInteraction000131457
      WBInteraction000131660
      WBInteraction000131704
      WBInteraction000131865
      WBInteraction000131978
      WBInteraction000132354
      WBInteraction000132480
      WBInteraction000132571
      WBInteraction000132696
      WBInteraction000132777
      WBInteraction000135964
      WBInteraction000152323
      WBInteraction000173872
      WBInteraction000173873
      WBInteraction000187331
      WBInteraction000187435
      WBInteraction000187598
      WBInteraction000200709
      WBInteraction000231249
      WBInteraction000236527
      WBInteraction000236528
      WBInteraction000236529
      WBInteraction000236530
      WBInteraction000236531
      WBInteraction000236532
      WBInteraction000236533
      WBInteraction000236534
      WBInteraction000236535
      WBInteraction000236536
      WBInteraction000236537
      WBInteraction000236538
      WBInteraction000236539
      WBInteraction000236540
      WBInteraction000236541
      WBInteraction000236542
      WBInteraction000276282
      WBInteraction000301905
      WBInteraction000320370
      WBInteraction000405962
      WBInteraction000463624
      WBInteraction000466968
      WBInteraction000475045
      WBInteraction000543343
      WBInteraction000543405
      WBInteraction000561275
  Map_info: Map: II Position: -15.5654
    Positive: Positive_clone: W09B6 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00004890
    WBPaper00027057
    WBPaper00027309
    WBPaper00029038
    WBPaper00038491
    WBPaper00055090
  Remark: Sequence connection from [source: A Walker]
    This gene was previously taf-3, 02/06/14 krb.
    Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene