WormBase Tree Display for Gene: WBGene00006373
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| WBGene00006373 | Evidence | Paper_evidence | WBPaper00003608 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | F55A11 | ||||||
| Identity | Version | 2 | |||||||
| Name | CGC_name | syx-5 | Person_evidence | WBPerson3132 | |||||
| WBPerson203 | |||||||||
| Sequence_name | F55A11.2 | ||||||||
| Molecular_name | F55A11.2 | ||||||||
| F55A11.2.1 | |||||||||
| CE05944 | |||||||||
| Other_name | syn-3 | Person_evidence | WBPerson203 | ||||||
| CELE_F55A11.2 | Accession_evidence | NDB | BX284605 | ||||||
| Public_name | syx-5 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:40 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| 2 | 16 Apr 2010 14:03:06 | WBPerson2970 | Name_change | CGC_name | syx-5 | ||||
| Other_name | syn-3 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | syx | ||||||||
| Allele (29) | |||||||||
| Strain | WBStrain00003671 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (19) | |||||||||
| Contained_in_operon | CEOP5300 | ||||||||
| Ortholog (33) | |||||||||
| Paralog | WBGene00006371 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00006372 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00006798 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00006374 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00012150 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00009478 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00022534 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | syx-5 is an ortholog of human STX5 (syntaxin 5); syx-5 is involved in apoptotic process, embryo development, hermaphrodite genitalia development, locomotion, nematode larval development, positive regulation of growth, receptor-mediated endocytosis, reproduction and secretion by cell; syx-5 is expressed in the pharynx, anal depressor muscle, nervous system, reproductive system, excretory gland cell, and the body wall musculature; at the sub-cellular level, SYX-5::GFP shows a punctate pattern in the epidermis that could correspond to the Golgi apparatus, in addition to a faint pattern highly reminiscent of adherens junctions. | Paper_evidence | WBPaper00048849 | |||||
| Person_evidence | WBPerson1677 | ||||||||
| Curator_confirmed | WBPerson324 | ||||||||
| Date_last_updated | 10 Feb 2016 00:00:00 | ||||||||
| Automated_description | Predicted to enable SNAP receptor activity and SNARE binding activity. Predicted to be involved in intracellular protein transport and vesicle-mediated transport. Predicted to be located in Golgi membrane. Predicted to be part of SNARE complex. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation type II. Is an ortholog of human STX5 (syntaxin 5). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0050571 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:11440) | ||||
| Molecular_info | Corresponding_CDS | F55A11.2 | |||||||
| Corresponding_transcript | F55A11.2.1 | ||||||||
| Other_sequence (50) | |||||||||
| Associated_feature | WBsf647293 | ||||||||
| WBsf647294 | |||||||||
| WBsf661771 | |||||||||
| WBsf232543 | |||||||||
| WBsf232544 | |||||||||
| Experimental_info | RNAi_result (29) | ||||||||
| Expr_pattern | Chronogram721 | ||||||||
| Expr6188 | |||||||||
| Expr12505 | |||||||||
| Expr1016887 | |||||||||
| Expr1032571 | |||||||||
| Expr1152197 | |||||||||
| Expr2017195 | |||||||||
| Expr2035331 | |||||||||
| Drives_construct | WBCnstr00004107 | ||||||||
| WBCnstr00021265 | |||||||||
| WBCnstr00037916 | |||||||||
| Construct_product | WBCnstr00021264 | ||||||||
| WBCnstr00021265 | |||||||||
| WBCnstr00037916 | |||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (77) | |||||||||
| Interaction (56) | |||||||||
| Map_info | Map | V | Position | 3.32983 | Error | 0.001739 | |||
| Positive | Positive_clone | F55A11 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference (11) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
