WormBase Tree Display for Gene: WBGene00006254
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| WBGene00006254 | SMap | S_parent | Sequence | F49C5 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | ||||||||
| Name | CGC_name | str-223 | Person_evidence | WBPerson42 | ||||||
| Sequence_name | F49C5.6 | |||||||||
| Molecular_name | F49C5.6 | |||||||||
| Other_name | CELE_F49C5.6 | Accession_evidence | NDB | BX284602 | ||||||
| Public_name | str-223 | |||||||||
| DB_info | Database | AceView | gene | 2M855 | ||||||
| WormQTL | gene | WBGene00006254 | ||||||||
| WormFlux | gene | WBGene00006254 | ||||||||
| NDB | locus_tag | CELE_F49C5.6 | ||||||||
| NCBI | gene | 186017 | ||||||||
| Species | Caenorhabditis elegans | |||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:40 | WBPerson1971 | Event | Imported | Initial conversion from geneace | |||
| 2 | 18 Feb 2016 15:22:31 | WBPerson1983 | Event | Changed_class | CDS | Pseudogene | ||||
| Status | Live | |||||||||
| Gene_info | Biotype | SO:0000336 | ||||||||
| Gene_class | str | |||||||||
| Allele (43) | ||||||||||
| RNASeq_FPKM (74) | ||||||||||
| Ortholog | WBGene00101842 | Pristionchus pacificus | From_analysis | OMA | ||||||
| WBGene00111053 | Pristionchus pacificus | From_analysis | OMA | |||||||
| WBGene00131292 | Caenorhabditis japonica | From_analysis | OMA | |||||||
| WBGene00153493 | Caenorhabditis brenneri | From_analysis | OMA | |||||||
| WBGene00183951 | Caenorhabditis japonica | From_analysis | TreeFam | |||||||
| WBGene00217707 | Caenorhabditis japonica | From_analysis | TreeFam | |||||||
| Inparanoid_8 | ||||||||||
| Paralog (219) | ||||||||||
| Structured_description | Automated_description | Is affected by hpl-2; sftb-1; and eri-1 based on tiling array; RNA-seq; and microarray studies. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | |||||||||
| WBPerson37462 | ||||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | |||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | |||||||||
| Molecular_info | Corresponding_CDS_history | F49C5.6:wp252 | ||||||||
| Corresponding_pseudogene | F49C5.6 | |||||||||
| Other_sequence | MHC10371_1 | |||||||||
| BE191651.1 | ||||||||||
| FG620833.1 | ||||||||||
| MIC02316_1 | ||||||||||
| MH03900 | ||||||||||
| MI02808 | ||||||||||
| Associated_feature | WBsf990139 | |||||||||
| Experimental_info | Expr_pattern | Expr1016004 | ||||||||
| Expr1151653 | ||||||||||
| Microarray_results (16) | ||||||||||
| Expression_cluster (29) | ||||||||||
| Interaction (24) | ||||||||||
| Map_info | Map | II | Position | 10.3278 | Error | 0.015653 | ||||
| Positive | Positive_clone | F49C5 | Inferred_automatically | From CDS info | ||||||
| From sequence, transcript, pseudogene data | ||||||||||
| Pseudo_map_position | ||||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
