WormBase Tree Display for Gene: WBGene00006039
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| WBGene00006039 | SMap | S_parent | Sequence | K07F5 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | ssp-10 | Person_evidence | WBPerson680 | |||||
| Sequence_name | K07F5.9 | ||||||||
| Molecular_name | K07F5.9 | ||||||||
| K07F5.9.1 | |||||||||
| CE06124 | |||||||||
| Other_name | CELE_K07F5.9 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | ssp-10 | ||||||||
| DB_info | Database | AceView | gene | 4K616 | |||||
| WormQTL | gene | WBGene00006039 | |||||||
| WormFlux | gene | WBGene00006039 | |||||||
| NDB | locus_tag | CELE_K07F5.9 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00006039|UniProtKB=Q21289 | |||||||
| family | PTHR22947 | ||||||||
| NCBI | gene | 177834 | |||||||
| RefSeq | protein | NM_069366.6 | |||||||
| SwissProt | UniProtAcc | Q21289 | |||||||
| UniProt_GCRP | UniProtAcc | Q21289 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:39 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | ssp | ||||||||
| Allele (12) | |||||||||
| Legacy_information | [C.elegansII] NMK. Sperm-specific transcript, 0.5 kb. Member of multi-gene family. [BA] | ||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (44) | |||||||||
| Paralog (34) | |||||||||
| Structured_description | Automated_description | Enriched in amphid sheath cell; germ line; sperm; and in male based on RNA-seq and single-cell RNA-seq studies. Is affected by several genes including daf-2; skn-1; and age-1 based on RNA-seq; microarray; and proteomic studies. Is affected by twenty-seven chemicals including hydrogen sulfide; Ethanol; and methylmercury hydroxide based on microarray; RNA-seq; and proteomic studies. Is predicted to encode a protein with the following domains: PapD-like superfamily; Major sperm protein (MSP) domain; Immunoglobulin-like fold; MSP (Major sperm protein) domain; and Phosphorylation site. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | K07F5.9 | |||||||
| Corresponding_transcript | K07F5.9.1 | ||||||||
| Other_sequence (61) | |||||||||
| Associated_feature | WBsf230627 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00022597 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00034086 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00016754 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00007486 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00050194 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1153890 | ||||||||
| Expr2016931 | |||||||||
| Expr2035078 | |||||||||
| Drives_construct | WBCnstr00034580 | ||||||||
| Construct_product | WBCnstr00034580 | ||||||||
| Microarray_results (16) | |||||||||
| Expression_cluster (217) | |||||||||
| Interaction (224) | |||||||||
| Map_info | Map | IV | Position | 4.43337 | Error | 0.000392 | |||
| Positive | Positive_clone | K07F5 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00004349 | ||||||||
| WBPaper00024421 | |||||||||
| WBPaper00057218 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
