WormBase Tree Display for Gene: WBGene00006004
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| WBGene00006004 | SMap | S_parent | Sequence | F56H9 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | srx-113 | Person_evidence | WBPerson522 | |||||
| Sequence_name | F56H9.1 | ||||||||
| Molecular_name | F56H9.1 | ||||||||
| F56H9.1.1 | |||||||||
| CE36310 | |||||||||
| Other_name | CELE_F56H9.1 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | srx-113 | ||||||||
| DB_info | Database | AceView | gene | 5N108 | |||||
| WormQTL | gene | WBGene00006004 | |||||||
| WormFlux | gene | WBGene00006004 | |||||||
| NDB | locus_tag | CELE_F56H9.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00006004|UniProtKB=Q20908 | |||||||
| family | PTHR46952 | ||||||||
| NCBI | gene | 186424 | |||||||
| RefSeq | protein | NM_073757.2 | |||||||
| TREEFAM | TREEFAM_ID | TF315574 | |||||||
| TrEMBL | UniProtAcc | Q20908 | |||||||
| UniProt_GCRP | UniProtAcc | Q20908 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:39 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | srx | ||||||||
| Allele (25) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00069525 | ||||||||
| Ortholog (14) | |||||||||
| Paralog (94) | |||||||||
| Structured_description | Automated_description | Predicted to be located in membrane. Expressed in FLP and tail neurons. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F56H9.1 | |||||||
| Corresponding_CDS_history | F56H9.1:wp117 | ||||||||
| Corresponding_transcript | F56H9.1.1 | ||||||||
| Experimental_info | Expr_pattern | Expr6236 | |||||||
| Expr14188 | |||||||||
| Expr15424 | |||||||||
| Expr1026860 | |||||||||
| Expr1152539 | |||||||||
| Drives_construct | WBCnstr00004084 | ||||||||
| WBCnstr00034601 | |||||||||
| Construct_product | WBCnstr00034601 | ||||||||
| Microarray_results (11) | |||||||||
| Expression_cluster | WBPaper00038438:E.faecalis_24hr_upregulated_TilingArray | ||||||||
| WBPaper00042477:rsr-2(RNAi)_upregulated_TilingArray | |||||||||
| WBPaper00045420:fertilization_downregulated_transcript | |||||||||
| WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C | |||||||||
| WBPaper00050488:N2_vs_mir-34(gk437)_regulated_dauer_20C | |||||||||
| WBPaper00061753:csr-1(tor159)_upregulated_25C | |||||||||
| WBPaper00062103:neuron_enriched | |||||||||
| WBPaper00062325:muscle_depleted_coding-RNA | |||||||||
| WBPaper00065746:eat-2(ad1113)_upregulated | |||||||||
| Interaction | WBInteraction000172322 | ||||||||
| WBInteraction000366257 | |||||||||
| Map_info | Map | V | Position | 4.5324 | Error | 0.001866 | |||
| Positive | Positive_clone | F56H9 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
