WormBase Tree Display for Gene: WBGene00005340
expand all nodes | collapse all nodes | view schema
| WBGene00005340 | SMap | S_parent | Sequence | R08H2 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | srh-122 | Person_evidence | WBPerson522 | |||||
| Sequence_name | R08H2.5 | ||||||||
| Molecular_name | R08H2.5 | ||||||||
| R08H2.5.1 | |||||||||
| CE33157 | |||||||||
| Other_name | CELE_R08H2.5 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | srh-122 | ||||||||
| DB_info | Database | AceView | gene | 5P858 | |||||
| WormQTL | gene | WBGene00005340 | |||||||
| WormFlux | gene | WBGene00005340 | |||||||
| NDB | locus_tag | CELE_R08H2.5 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00005340|UniProtKB=O17988 | |||||||
| family | PTHR22941 | ||||||||
| NCBI | gene | 187712 | |||||||
| RefSeq | protein | NM_074417.2 | |||||||
| TrEMBL | UniProtAcc | O17988 | |||||||
| UniProt_GCRP | UniProtAcc | O17988 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:38 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | srh | ||||||||
| Allele (31) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00031212 | ||||||||
| Ortholog (48) | |||||||||
| Paralog (297) | |||||||||
| Structured_description | Automated_description | Predicted to be located in membrane. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | R08H2.5 | |||||||
| Corresponding_CDS_history | R08H2.5:wp93 | ||||||||
| Corresponding_transcript | R08H2.5.1 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00051572 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00051573 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00017611 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00017610 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1155247 | ||||||||
| Drives_construct | WBCnstr00035030 | ||||||||
| Construct_product | WBCnstr00035030 | ||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster | WBPaper00045420:fertilization_downregulated_transcript | ||||||||
| WBPaper00061527:srj-21-srh-32 | |||||||||
| WBPaper00061527:srj-42-srw-113 | |||||||||
| WBPaper00062103:neuron_enriched | |||||||||
| WBPaper00025141:N2_Expressed_Genes | |||||||||
| WBPaper00025141:unc-4::GFP_Expressed_Genes | |||||||||
| WBPaper00030985:Erwinia_carotovora_downregulated | |||||||||
| WBPaper00041939:control_vs_UVC-exposed_51h | |||||||||
| WBPaper00048989:eat-2(ad465)_rapamycin_upregulated | |||||||||
| Interaction | WBInteraction000184712 | ||||||||
| WBInteraction000205732 | |||||||||
| WBInteraction000215924 | |||||||||
| WBInteraction000345384 | |||||||||
| WBInteraction000390762 | |||||||||
| WBInteraction000396870 | |||||||||
| WBInteraction000403618 | |||||||||
| WBInteraction000406005 | |||||||||
| WBInteraction000416271 | |||||||||
| WBInteraction000451459 | |||||||||
| Map_info | Map | V | Position | 7.93439 | Error | 0.002543 | |||
| Positive | Positive_clone | R08H2 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
