WormBase Tree Display for Gene: WBGene00005316
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| WBGene00005316 | SMap | S_parent | Sequence | F49H6 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | srh-97 | Person_evidence | WBPerson522 | |||||
| Sequence_name | F49H6.4 | ||||||||
| Molecular_name | F49H6.4 | ||||||||
| F49H6.4.1 | |||||||||
| CE18714 | |||||||||
| Other_name | CELE_F49H6.4 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | srh-97 | ||||||||
| DB_info | Database | AceView | gene | 5R497 | |||||
| WormQTL | gene | WBGene00005316 | |||||||
| WormFlux | gene | WBGene00005316 | |||||||
| NDB | locus_tag | CELE_F49H6.4 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00005316|UniProtKB=Q9XV05 | |||||||
| family | PTHR22941 | ||||||||
| NCBI | gene | 186072 | |||||||
| RefSeq | protein | NM_074907.1 | |||||||
| TrEMBL | UniProtAcc | Q9XV05 | |||||||
| UniProt_GCRP | UniProtAcc | Q9XV05 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:38 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | srh | ||||||||
| Allele (139) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00102217 | ||||||||
| Ortholog (50) | |||||||||
| Paralog (298) | |||||||||
| Structured_description | Automated_description | Predicted to be located in membrane. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F49H6.4 | |||||||
| Corresponding_transcript | F49H6.4.1 | ||||||||
| Associated_feature | WBsf1002582 | ||||||||
| WBsf1002583 | |||||||||
| WBsf1021221 | |||||||||
| WBsf1021222 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00015359 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00047900 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1012762 | ||||||||
| Expr1151731 | |||||||||
| Expr2016525 | |||||||||
| Expr2034724 | |||||||||
| Drives_construct | WBCnstr00035045 | ||||||||
| Construct_product | WBCnstr00035045 | ||||||||
| Microarray_results (14) | |||||||||
| Expression_cluster | WBPaper00050488:adult_vs_dauer_regulated_N2_20C | ||||||||
| WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C | |||||||||
| WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult | |||||||||
| WBPaper00055226:adr-1(tm668)_downregulated | |||||||||
| WBPaper00061527:srj-42-srw-113 | |||||||||
| WBPaper00062103:neuron_enriched | |||||||||
| WBPaper00062520:qui-1(db104)_downregulated | |||||||||
| cgc4489_group_9 | |||||||||
| WBPaper00027111:rde-3(ne298)_upregulated | |||||||||
| WBPaper00027111:rrf-1(pk1417)_upregulated | |||||||||
| Interaction (80) | |||||||||
| Map_info | Map | V | Position | 11.6601 | Error | 0.035611 | |||
| Positive | Positive_clone | F49H6 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00026594 | ||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
