WormBase Tree Display for Gene: WBGene00005159
expand all nodes | collapse all nodes | view schema
| WBGene00005159 | SMap | S_parent | Sequence | C18F10 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | srg-1 | Person_evidence | WBPerson42 | |||||
| Sequence_name | C18F10.4 | ||||||||
| Molecular_name | C18F10.4 | ||||||||
| C18F10.4.1 | |||||||||
| CE33270 | |||||||||
| Other_name | CELE_C18F10.4 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | srg-1 | ||||||||
| DB_info | Database | AceView | gene | 3H344 | |||||
| WormQTL | gene | WBGene00005159 | |||||||
| WormFlux | gene | WBGene00005159 | |||||||
| NDB | locus_tag | CELE_C18F10.4 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00005159|UniProtKB=P46570 | |||||||
| family | PTHR31627 | ||||||||
| NCBI | gene | 191828 | |||||||
| RefSeq | protein | NM_065965.3 | |||||||
| SwissProt | UniProtAcc | P46570 | |||||||
| TREEFAM | TREEFAM_ID | TF315299 | |||||||
| UniProt_GCRP | UniProtAcc | P46570 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:37 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | srg | ||||||||
| Allele (22) | |||||||||
| Legacy_information | [C.elegansII] NMK. Encodes predicted serpentine receptor. In possible operon, srg-1 to srg-9. [Troemel et al. 1995; CX] | ||||||||
| Strain | WBStrain00047642 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00046484 | ||||||||
| 00046485 | |||||||||
| 00113574 | |||||||||
| 00113575 | |||||||||
| 00113576 | |||||||||
| Ortholog (21) | |||||||||
| Paralog (32) | |||||||||
| Structured_description | Automated_description | Predicted to enable transmembrane signaling receptor activity. Predicted to be involved in sensory perception of chemical stimulus. Predicted to be located in membrane. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C18F10.4 | |||||||
| Corresponding_CDS_history | C18F10.4:wp93 | ||||||||
| C18F10.4:wp212 | |||||||||
| Corresponding_transcript | C18F10.4.1 | ||||||||
| Associated_feature | WBsf226793 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00035489 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00011013 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00040961 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00005927 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1021749 | ||||||||
| Expr1145003 | |||||||||
| Expr2016319 | |||||||||
| Expr2034546 | |||||||||
| Drives_construct | WBCnstr00035158 | ||||||||
| Construct_product | WBCnstr00035158 | ||||||||
| Microarray_results (14) | |||||||||
| Expression_cluster | WBPaper00033065:cyc-1(RNAi)_downregulated | ||||||||
| WBPaper00037055:DAF-16_binding_DNA | |||||||||
| WBPaper00038438:E.faecalis_24hr_upregulated_TilingArray | |||||||||
| WBPaper00038438:S.marcescens_24hr_downregulated_TilingArray | |||||||||
| WBPaper00040560:hpl-2_embryo_downregulated | |||||||||
| WBPaper00045420:fertilization_downregulated_transcript | |||||||||
| WBPaper00050370:dpy-21(e428)_L3_downregulated | |||||||||
| WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult | |||||||||
| WBPaper00053888:drh-3(rrr2)_upregulated | |||||||||
| WBPaper00057254:MWCNT_downregulated_mRNA | |||||||||
| WBPaper00061527:srj-42-srw-113 | |||||||||
| WBPaper00061753:csr-1(tor159)_downregulated_20C | |||||||||
| WBPaper00062103:neuron_enriched | |||||||||
| WBPaper00062325:muscle_depleted_coding-RNA | |||||||||
| WBPaper00065841:63_0 | |||||||||
| cgc4489_group_13 | |||||||||
| WBPaper00025141:N2_Expressed_Genes | |||||||||
| WBPaper00025141:unc-4::GFP_Expressed_Genes | |||||||||
| WBPaper00026929:sir-2.1_overexpression_regulated | |||||||||
| WBPaper00026952:class_B | |||||||||
| WBPaper00031252:AIN-1_IP_enriched | |||||||||
| WBPaper00040858:eQTL_regulated_old | |||||||||
| WBPaper00041939:control_vs_UVC-EtBr-exposed_48h | |||||||||
| WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_48h | |||||||||
| WBPaper00048989:N2_rapamycin_downregulated | |||||||||
| [cgc5376]:let-60(G12V)-regulated_genes | |||||||||
| Interaction (42) | |||||||||
| Map_info | Map | III | Position | -1.40745 | Error | 6.2e-05 | |||
| Positive | Positive_clone | C18F10 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00001521 | ||||||||
| WBPaper00002314 | |||||||||
| WBPaper00004238 | |||||||||
| WBPaper00015440 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
