WormBase Tree Display for Gene: WBGene00005156
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WBGene00005156 | Identity (5) | ||||||
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Gene_info | Gene_class | srf | |||||
Allele | WBVar00275414 | Inferred_automatically | From strain object: AT18 | ||||
From strain object: AT28 | |||||||
WBVar00275415 | Inferred_automatically | From strain object: AT24 | |||||
WBVar00275416 | Inferred_automatically | From strain object: AT25 | |||||
WBVar00275410 | |||||||
WBVar00275417 | |||||||
Legacy_information | [Grenache DG] srf for SuRFace antigen. Animal express an L1-specific antigen detected by mouse monoclonal antibodies M37 and M38 at stages L1 - L4 but not as adults. No visible phenotype. | ||||||
[Grenache DG] srf for SuRFace antigen. Animal express an L1-specific antigen detected by mouse monoclonal antibodies M37 and M38 at stages L1 - L4 but not as adults. No visible phenotype. | |||||||
[C.elegansII] yj13 : all larval stages (but not adult) label with L1-specific mAbs M37, M38. Gross phenotype WT. See also daf-1,4,7,8,11,14. OA4: yj41, yj43, yj5, yj15. [AT; DR] | |||||||
Complementation_data | [Grenache DG] Reference allele yj13 fails to complement yj5, yj15, yj41, and yj43 | ||||||
Strain | WBStrain00047205 | ||||||
WBStrain00047206 | |||||||
WBStrain00047204 | |||||||
WBStrain00047203 | |||||||
Structured_description | Concise_description | srf-6 was identified in surface immunofluorescence screens for mutants that show constitutive larval display (CLD) of the L1 epitope on all four larval stages; normally wild-type worms can be induced to display a first larval stage (L1) epitope in response to environmental signals, known as the inducible larval display (ILD); srf-6 is required for chemotaxis, similar to the genes osm-3 (a cytoplasmic kinesin), che-3 (a cyotosolic dynein heavy chain), and tax-4 (a cyclic-nucleotide-gated ion channel subunit), whose mutants show reduced ILD and block the CLD of srf-6; srf-6 interacts with the genes in the TGF-beta like pathway like daf-14 to enhance the dauer-constitutive phenotype; srf-6 mutants are also resistant to the attachment of Yersinia biofilms; thus srf-6 may play a regulatory role in the overlapping functions of chemotaxis, dauer formation and surface determination. | Paper_evidence | WBPaper00002589 | |||
WBPaper00028386 | |||||||
WBPaper00029153 | |||||||
Curator_confirmed | WBPerson324 | ||||||
Date_last_updated | 04 Oct 2011 00:00:00 | ||||||
Disease_info | Experimental_model | DOID:104 | Homo sapiens | Paper_evidence | WBPaper00029153 | ||
Curator_confirmed | WBPerson324 | ||||||
Date_last_updated | 07 Nov 2023 00:00:00 | ||||||
Disease_relevance | C. elegans is used as a model system to study bacterial adherence via biofilm formation and to identify genes in the infectious agent as well as the host that are required for infection; elegans srf genes are required for cuticle surface properties like binding to antigens, and for the adherence of bacterial pathogens like Yersinia pseduotuberculosis and Yersinia pestis via biofilms. | Homo sapiens | Paper_evidence | WBPaper00001706 | |||
WBPaper00026735 | |||||||
WBPaper00029153 | |||||||
Curator_confirmed | WBPerson324 | ||||||
Date_last_updated | 06 Mar 2013 00:00:00 | ||||||
Models_disease_in_annotation | WBDOannot00000018 | ||||||
Experimental_info | Interaction (18) | ||||||
Map_info | Map | II | Position | 0.106368 | Error | 0.015512 | |
Well_ordered | |||||||
Mapping_data | Multi_point | 2653 | |||||
2654 | |||||||
2655 | |||||||
2657 | |||||||
2658 | |||||||
2659 | |||||||
Pos_neg_data | 7204 | ||||||
7205 | |||||||
7206 | |||||||
7209 | |||||||
7210 | |||||||
Reference (25) | |||||||
Method | Gene |