WormBase Tree Display for Gene: WBGene00005131

WBGene00005131 Evidence: Person_evidence: WBPerson522
  SMap: S_parent: Sequence: F13G3
  Identity: Version: 1
    Name: CGC_name: srd-53 Person_evidence: WBPerson522
      Sequence_name: F13G3.2
      Molecular_name: F13G3.2
        F13G3.2.1
        CE05614
      Other_name: CELE_F13G3.2 Accession_evidence: NDB BX284601
      Public_name: srd-53
    DB_info: Database: AceView gene 1H873
        WormQTL gene WBGene00005131
        WormFlux gene WBGene00005131
        NDB locus_tag CELE_F13G3.2
        Panther gene CAEEL|WormBase=WBGene00005131|UniProtKB=Q19419
          family PTHR22945
        NCBI gene 184430
        RefSeq protein NM_059660.2
        TREEFAM TREEFAM_ID TF315493
        TrEMBL UniProtAcc Q19419
        UniProt_GCRP UniProtAcc Q19419
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:37 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: srd
    Allele (16)
    RNASeq_FPKM (74)
    GO_annotation: 00064669
      00064670
    Ortholog (19)
    Paralog (69)
    Structured_description: Automated_description: Predicted to be located in membrane. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F13G3.2
    Corresponding_transcript: F13G3.2.1
    Associated_feature: WBsf656504
      WBsf217989
  Experimental_info: RNAi_result: WBRNAi00044536 Inferred_automatically: RNAi_primary
      WBRNAi00003369 Inferred_automatically: RNAi_primary
      WBRNAi00030903 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1011013
      Expr1148490
      Expr2016252
      Expr2034482
    Drives_construct: WBCnstr00035173
    Construct_product: WBCnstr00035173
    Microarray_results (20)
    Expression_cluster: WBPaper00031040:TGF-beta_adult_upregulated
      WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
      WBPaper00038438:D.coniospora_12hr_downregulated_RNAseq
      WBPaper00038438:P.lumniescens_24hr_upregulated_RNAseq
      WBPaper00044736:oscillating_dev_expression
      WBPaper00049920:Glucose-Diet_upregulated_hyl-2(tm2031)
      WBPaper00049920:Glucose-Diet_upregulated_N2
      WBPaper00049942:HeatShock_upregulated_hsf-1(RNAi)
      WBPaper00050488:20C_vs_25C_regulated_N2_adult
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050488:N2_vs_mir-34(gk437)_regulated_dauer_20C
      WBPaper00051404:alg-1(gk214)_downregulated
      WBPaper00051558:aging_regulated
      WBPaper00053402:his-3(RNAi)_upregulated
      WBPaper00053888:drh-3(rrr2)_downregulated
      WBPaper00055226:adr-1(tm668)_downregulated
      WBPaper00055354:Rapamycin-Rifampicin-Allantoin_downregulated
      WBPaper00055354:Rapamycin-Rifampicin-Psora_downregulated
      WBPaper00055354:Rapamycin-Rifampicin_downregulated
      WBPaper00055941:atfs-1(et15)_upregulated
      WBPaper00056169:rrf-3(pk1426)_downregulated_L4
      WBPaper00056284:ints-1(RNAi)_upregulated
      WBPaper00056330:glycine_downregulated
      WBPaper00056443:sek-1(km4)_upregulated
      WBPaper00056471:aak-1(tm1944);aak-2(ok524)_upregulated
      WBPaper00056471:S.aureus-4h_downregulated_N2
      WBPaper00057068:Cadmium_downregulated
      WBPaper00057068:numr-1(RNAi)_downregulated
      WBPaper00058598:mex-1(or286)_downregulated
      WBPaper00058598:sin-3(tm1276)_upregulated
      WBPaper00058598:spn-4(tm291)_downregulated
      WBPaper00059027:neuron-synapses_depleted
      WBPaper00059824:rnp-6(dh1127)_regulated_OP50
      WBPaper00059987:Wounding_downregulated
      WBPaper00060434:pH4.33_vs_pH6.33_downrgulated
      WBPaper00060661:sensory-neuron_enriched
      WBPaper00060909:atfs-1(cmh15)_downregulated
      WBPaper00061081:E.faecalis_upregulated_N2
      WBPaper00061203:sin-3(tm1276)_downregulated
      WBPaper00061274:microgravity_downregulated
      WBPaper00061341:28C_48h_upregulated
      WBPaper00061424:Diet_MYb131_upregulated
      WBPaper00061439:unc-30(ok613)_upregulated
      WBPaper00061527:ugt-27-C28G1.2
      WBPaper00061530:nhr-49(e2144)_downregulated
      WBPaper00061651:ASI_enriched
      WBPaper00061651:ASK_enriched
      WBPaper00062146:MOG-7-degron_1h_regulated
      WBPaper00062345:bortezomib_4h_upregulated_N2
      WBPaper00062345:bortezomib_4h_upregulated_zip-1(jy13)
      WBPaper00062446:nhr-8(hd117)_upregulated
      WBPaper00062585:hlh-26(ok1453)_downregulated_E.faecium
      WBPaper00062590:Aging_downregulated_intestine
      WBPaper00064088:Day-1-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
      WBPaper00064088:Day-1-adult_vs_L4_downregulated_fem-3(q20)
      WBPaper00064088:Day-1-adult_vs_L4_downregulated_glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_fem-3(q20)
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_glp-1(e2141)
      WBPaper00064539:nhr-114(gk849)_downregulated
      WBPaper00064721:fasn-1(g14)_downregulated_starved
      WBPaper00065005:sams-3(RNAi)_upregulated
      WBPaper00065005:sams-4(RNAi)_upregulated
      WBPaper00065096:25C_vs_20C_downregulated
      WBPaper00065096:Day10_vs_Day1_downregulated
      WBPaper00065749:Heat-Shock_downregulated_N2
      WBPaper00065841:63_0
      WBPaper00065841:77_0
      WBPaper00065841:93_0
      WBPaper00065984:pals-17(syb3980)_downregulated
      WBPaper00065993:glp-1(e2141)_upregulated
      WBPaper00066232:hsf-1(RNAi)_upregulated_ash-2
      WBPaper00066232:hsf-1(RNAi)_upregulated_WT
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00026929:Resveratrol_regulated_daf-16
      WBPaper00028789:PA14_vs_gacA_upregulated_8hr
      WBPaper00028789:PA14_vs_OP50_upregulated_8hr
      WBPaper00031252:AIN-1_IP_enriched
      WBPaper00034739:N2lessDR1350
      WBPaper00036286:Pattern_G
      WBPaper00038172:crh-1null_up_regulated
      WBPaper00038231:Cry5B_1.5-fold_upregulated
      WBPaper00038304:octr-1_regulated
      WBPaper00041939:EtBr-exposed_vs_UVC-exposed_48h
      WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_48h
      WBPaper00045673:colistin_upregulated
      WBPaper00046548:dafachronic-acid_upregulated
      WBPaper00047070:N2_starvation_downregulated
      WBPaper00047070:N2_UV_upregulated
      WBPaper00053236:Starvation_regulated_N2
      WBPaper00053688:E.faecalis_upregulated
      WBPaper00055899:nitroguanidine_regulated
    Interaction: WBInteraction000142117
      WBInteraction000181773
      WBInteraction000205069
      WBInteraction000280053
      WBInteraction000441111
  Map_info: Map: I Position: 1.87536 Error: 0.000383
    Positive: Positive_clone: F13G3 Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Pseudo_map_position
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene