WormBase Tree Display for Gene: WBGene00005023
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WBGene00005023 | Evidence | Paper_evidence | WBPaper00005867 | ||||
---|---|---|---|---|---|---|---|
SMap | S_parent | Sequence | T24D1 | ||||
Identity | Version | 2 | |||||
Name | CGC_name | sqv-5 | Person_evidence | WBPerson268 | |||
Sequence_name | T24D1.1 | ||||||
Molecular_name | T24D1.1a | ||||||
T24D1.1a.1 | |||||||
CE50401 | |||||||
T24D1.1b | |||||||
CE39182 | |||||||
T24D1.1c | |||||||
CE50402 | |||||||
T24D1.1b.1 | |||||||
T24D1.1c.1 | |||||||
Other_name | ChSy-S | Accession_evidence | EMBL | AB088398 | |||
CELE_T24D1.1 | Accession_evidence | NDB | BX284601 | ||||
Public_name | sqv-5 | ||||||
DB_info | Database (13) | ||||||
Species | Caenorhabditis elegans | ||||||
History | Version_change (2) | ||||||
Split_into | WBGene00303082 | ||||||
Status | Live | ||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | sqv | ||||||
Allele (53) | |||||||
Legacy_information | [Herman T] sqv for squashed vulva. morphology of L4 vulva abnormal (invagination considerably reduced). hermaphrodites self-sterile. | ||||||
[C.elegansII] n3039 : morphology of L4 vulva abnormal (invagination considerably reduced); hermaphrodites self-sterile. [MT] | |||||||
Strain | WBStrain00027364 | ||||||
WBStrain00027385 | |||||||
WBStrain00028700 | |||||||
WBStrain00028702 | |||||||
WBStrain00007564 | |||||||
RNASeq_FPKM (74) | |||||||
GO_annotation (21) | |||||||
Ortholog (44) | |||||||
Paralog | WBGene00003253 | Caenorhabditis elegans | From_analysis | Panther | |||
WormBase-Compara | |||||||
Structured_description | Concise_description | sqv-5 encodes a chondroitin synthase that both initiates and elongates chondroitin chains (unlike human chondroitin synthase, which only elongates them); SQV-5 is required for cytokinesis (e.g., at the one-cell embryo stage), gonad migration, and vulval morphogenesis (by expanding the extracellular space of the vulva in L4 larvae); the common requirement for SQV-5 in both processes may be to promote filling an extracellular space with fluid (either in the eggshell, or underneath the L4 cuticle); SQV-5 colocalizes with SQV-1 at punctate foci (probably the Golgi apparatus) in the cytoplasm of the vulva, the uterus and oocytes; SQV-5 is most similar to human chondroitin synthase (KIAA0990) and Drosophila CG9220. | Paper_evidence | WBPaper00003405 | |||
WBPaper00003736 | |||||||
WBPaper00003906 | |||||||
WBPaper00005540 | |||||||
WBPaper00005867 | |||||||
WBPaper00005868 | |||||||
WBPaper00012887 | |||||||
Curator_confirmed | WBPerson567 | ||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||
Automated_description | Enables enzyme binding activity. Involved in several processes, including egg-laying behavior; positive regulation of vulval development; and vulval development. Located in cytoplasm. Expressed in oocyte; uterus; and vulva. Human ortholog(s) of this gene implicated in temtamy preaxial brachydactyly syndrome. Is an ortholog of human CHSY1 (chondroitin sulfate synthase 1) and CHSY3 (chondroitin sulfate synthase 3). | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Disease_info | Potential_model | DOID:0050814 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:17198) | ||
Molecular_info | Corresponding_CDS | T24D1.1a | |||||
T24D1.1b | |||||||
T24D1.1c | |||||||
Corresponding_CDS_history | T24D1.1a:wp149 | ||||||
T24D1.1a:wp246 | |||||||
T24D1.1b:wp149 | |||||||
T24D1.1d:wp264 | |||||||
Corresponding_transcript | T24D1.1a.1 | ||||||
T24D1.1b.1 | |||||||
T24D1.1c.1 | |||||||
Other_sequence (32) | |||||||
Associated_feature (14) | |||||||
Experimental_info | RNAi_result (14) | ||||||
Expr_pattern | Expr2566 | ||||||
Expr3104 | |||||||
Expr1023591 | |||||||
Expr1032506 | |||||||
Expr1157585 | |||||||
Expr2016123 | |||||||
Expr2034358 | |||||||
Drives_construct | WBCnstr00018534 | ||||||
WBCnstr00035261 | |||||||
Construct_product | WBCnstr00018534 | ||||||
WBCnstr00035261 | |||||||
Antibody | WBAntibody00000621 | ||||||
WBAntibody00001858 | |||||||
Microarray_results (29) | |||||||
Expression_cluster (160) | |||||||
Interaction (66) | |||||||
Map_info | Map | I | Position | 4.09354 | Error | 0.007416 | |
Positive | Positive_clone | T24D1 | Inferred_automatically | From CDS info | |||
From sequence, transcript, pseudogene data | |||||||
Mapping_data | Multi_point | 3143 | |||||
3144 | |||||||
5407 | |||||||
5544 | |||||||
Reference (32) | |||||||
Method | Gene |