WormBase Tree Display for Gene: WBGene00005015
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| WBGene00005015 | Evidence | CGC_data_submission | |||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | CHROMOSOME_IV | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | spt-5 | |||||||
| Sequence_name | K08E4.1 | ||||||||
| Molecular_name | K08E4.1 | ||||||||
| K08E4.1.1 | |||||||||
| CE06145 | |||||||||
| Other_name | CELE_K08E4.1 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | spt-5 | ||||||||
| DB_info | Database | AceView | gene | 4M819 | |||||
| WormQTL | gene | WBGene00005015 | |||||||
| WormFlux | gene | WBGene00005015 | |||||||
| NDB | locus_tag | CELE_K08E4.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00005015|UniProtKB=Q21338 | |||||||
| family | PTHR11125 | ||||||||
| NCBI | gene | 178143 | |||||||
| RefSeq | protein | NM_069882.6 | |||||||
| SwissProt | UniProtAcc | Q21338 | |||||||
| TREEFAM | TREEFAM_ID | TF105730 | |||||||
| UniProt_GCRP | UniProtAcc | Q21338 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:37 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | spt | ||||||||
| Allele (57) | |||||||||
| Strain | WBStrain00001278 | ||||||||
| WBStrain00001279 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (11) | |||||||||
| Contained_in_operon | CEOP4623 | ||||||||
| Ortholog (41) | |||||||||
| Structured_description | Automated_description | Predicted to enable mRNA binding activity. Predicted to be involved in transcription elongation by RNA polymerase II. Part of euchromatin. Expressed in several structures, including head and tail. Is an ortholog of human SUPT5H (SPT5 homolog, DSIF elongation factor subunit). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | K08E4.1 | |||||||
| Corresponding_transcript | K08E4.1.1 | ||||||||
| Other_sequence (37) | |||||||||
| Associated_feature | WBsf646445 | ||||||||
| WBsf646446 | |||||||||
| WBsf660780 | |||||||||
| WBsf229239 | |||||||||
| WBsf229240 | |||||||||
| Transcription_factor | WBTranscriptionFactor000315 | ||||||||
| Experimental_info | RNAi_result (27) | ||||||||
| Expr_pattern | Chronogram2059 | ||||||||
| Expr6364 | |||||||||
| Expr11663 | |||||||||
| Expr1021241 | |||||||||
| Expr1032498 | |||||||||
| Expr1153991 | |||||||||
| Expr2016100 | |||||||||
| Expr2034335 | |||||||||
| Drives_construct | WBCnstr00002173 | ||||||||
| WBCnstr00002174 | |||||||||
| WBCnstr00035267 | |||||||||
| Construct_product | WBCnstr00019160 | ||||||||
| WBCnstr00035267 | |||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (101) | |||||||||
| Interaction (288) | |||||||||
| Map_info | Map | IV | Position | 5.58232 | Error | 0.018194 | |||
| Positive | Positive_clone | K08E4 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00005411 | ||||||||
| WBPaper00017762 | |||||||||
| WBPaper00027309 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00044000 | |||||||||
| WBPaper00047473 | |||||||||
| WBPaper00048493 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00059065 | |||||||||
| WBPaper00065308 | |||||||||
| Remark | Sequence connection from [Blackwell K] | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
