WormBase Tree Display for Gene: WBGene00005011
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WBGene00005011 | SMap | S_parent | Sequence | F26F4 | |||
---|---|---|---|---|---|---|---|
Identity (6) | |||||||
Gene_info | Biotype | SO:0001217 | |||||
Allele (19) | |||||||
Strain | WBStrain00002933 | ||||||
WBStrain00002182 | |||||||
WBStrain00002301 | |||||||
WBStrain00000425 | |||||||
RNASeq_FPKM (74) | |||||||
Contained_in_operon | CEOP3867 | ||||||
Ortholog (13) | |||||||
Paralog | WBGene00017832 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||
Structured_description | Automated_description | Enriched in several structures, including ABalaaaala; cephalic sheath cell; ciliated neurons; germ line; and male distal tip cell based on tiling array; RNA-seq; and single-cell RNA-seq studies. Is affected by several genes including daf-12; hsf-1; and elt-2 based on microarray; tiling array; and RNA-seq studies. Is affected by eleven chemicals including rotenone; manganese chloride; and D-glucose based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: Zinc finger, C2H2 type; Zinc finger C2H2 superfamily; and Zinc finger C2H2-type. | Paper_evidence | WBPaper00065943 | |||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | F26F4.8 | |||||
Corresponding_CDS_history | F26F4.8:wp183 | ||||||
Corresponding_transcript | F26F4.8.1 | ||||||
Associated_feature | WBsf651015 | ||||||
WBsf978459 | |||||||
WBsf226600 | |||||||
Transcription_factor | WBTranscriptionFactor000890 | ||||||
Experimental_info | RNAi_result | WBRNAi00045673 | Inferred_automatically | RNAi_primary | |||
WBRNAi00005276 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00013968 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Chronogram1495 | ||||||
Chronogram1844 | |||||||
Expr5881 | |||||||
Expr5882 | |||||||
Expr1023346 | |||||||
Expr1032495 | |||||||
Expr1149592 | |||||||
Expr2003038 | |||||||
Expr2021252 | |||||||
Drives_construct | WBCnstr00002936 | ||||||
WBCnstr00004460 | |||||||
WBCnstr00004461 | |||||||
WBCnstr00035269 | |||||||
Construct_product | WBCnstr00035269 | ||||||
WBCnstr00038847 | |||||||
Microarray_results (18) | |||||||
Expression_cluster (153) | |||||||
Interaction | WBInteraction000525980 | ||||||
WBInteraction000526010 | |||||||
WBInteraction000527411 | |||||||
Map_info | Map | III | Position | -2.39353 | Error | 0.003045 | |
Positive | Positive_clone | F26F4 | Inferred_automatically | From CDS info | |||
From sequence, transcript, pseudogene data | |||||||
Pseudo_map_position | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
This gene was previously incorrectly identified as spt-1 based on an unintended error in the CGC strain data files | Curator_confirmed | WBPerson1971 | |||||
Method | Gene |