WormBase Tree Display for Gene: WBGene00005003

WBGene00005003 Evidence: Author_evidence: Patthy L
      Hodgkin JA
  SMap: S_parent: Sequence: F27C8
  Identity: Version: 1
    Name: CGC_name: spp-18
      Sequence_name: F27C8.4
      Molecular_name: F27C8.4a
        F27C8.4a.1
        CE03269
        F27C8.4b
        CE49790
        F27C8.4b.1
      Other_name: CELE_F27C8.4 Accession_evidence: NDB BX284604
      Public_name: spp-18
    DB_info: Database: AceView gene 4K359
        WormQTL gene WBGene00005003
        WormFlux gene WBGene00005003
        NDB locus_tag CELE_F27C8.4
        NCBI gene 185015
        RefSeq protein NM_001307043.3
            NM_069303.6
        TrEMBL UniProtAcc A0A061AKY5
            Q19837
        UniProt_GCRP UniProtAcc Q19837
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:37 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: spp
    Allele (13)
    RNASeq_FPKM (74)
    GO_annotation: 00066022
    Ortholog: WBGene00072225 Caenorhabditis remanei From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00039140 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00140260 Caenorhabditis brenneri From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00114075 Pristionchus pacificus From_analysis: OMA
            Inparanoid_8
      WBGene00131227 Caenorhabditis japonica From_analysis: Inparanoid_8
            WormBase-Compara
      CBOVI.g2316 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP26.g19941 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g21156 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g8098 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g25136 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g14539 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g13950 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g15019 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP39.g22629 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g22234 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cni-spp-18 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold532.g3174 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00186.g6567 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_11902 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_013469 Caenorhabditis remanei From_analysis: WormBase-Compara
      Sp34_40341010 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrIV_pilon.g11356 Caenorhabditis elegans From_analysis: WormBase-Compara
    Structured_description: Automated_description: Involved in innate immune response. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F27C8.4a
      F27C8.4b
    Corresponding_transcript: F27C8.4a.1
      F27C8.4b.1
    Other_sequence: CSC00706_1
      Acan_isotig15926
      FD517186.1
      CBC01973_1
      FD514900.1
      FD516627.1
      Oden_isotig24770
      CBC01973_2
      CJC02180_1
    Associated_feature: WBsf646242
      WBsf228846
      WBsf228847
  Experimental_info: RNAi_result: WBRNAi00092944 Inferred_automatically: RNAi_primary
      WBRNAi00045735 Inferred_automatically: RNAi_primary
      WBRNAi00075930 Inferred_automatically: RNAi_primary
      WBRNAi00013994 Inferred_automatically: RNAi_primary
      WBRNAi00031491 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1013487
      Expr1032489
      Expr1149642
      Expr2016073
      Expr2034309
    Drives_construct: WBCnstr00035276
    Construct_product: WBCnstr00035276
    Microarray_results (18)
    Expression_cluster (292)
    Interaction (48)
  Map_info: Map: IV Position: 4.32629 Error: 0.001722
    Positive: Positive_clone: F27C8 Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00006465
    WBPaper00024209
    WBPaper00027295
    WBPaper00028482
    WBPaper00061383
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene