WormBase Tree Display for Gene: WBGene00005001
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| WBGene00005001 | Evidence | Author_evidence | Patthy L | ||||||
|---|---|---|---|---|---|---|---|---|---|
| Hodgkin JA | |||||||||
| SMap | S_parent | Sequence | F32D8 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | spp-16 | |||||||
| Sequence_name | F32D8.9 | ||||||||
| Molecular_name | F32D8.9 | ||||||||
| F32D8.9.1 | |||||||||
| CE05788 | |||||||||
| Other_name | CELE_F32D8.9 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | spp-16 | ||||||||
| DB_info | Database | AceView | gene | 5L378 | |||||
| WormQTL | gene | WBGene00005001 | |||||||
| WormFlux | gene | WBGene00005001 | |||||||
| NDB | locus_tag | CELE_F32D8.9 | |||||||
| NCBI | gene | 185207 | |||||||
| RefSeq | protein | NM_073379.8 | |||||||
| TrEMBL | UniProtAcc | Q19968 | |||||||
| UniProt_GCRP | UniProtAcc | Q19968 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:37 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | spp | ||||||||
| Allele (14) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (20) | |||||||||
| Structured_description | Automated_description | Enriched in ALA; head mesodermal cell; intestine; and pm8 based on tiling array; RNA-seq; and single-cell RNA-seq studies. Is affected by several genes including skn-1; dpy-10; and daf-12 based on microarray; tiling array; and RNA-seq studies. Is affected by fifteen chemicals including methylmercuric chloride; rotenone; and mianserin based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domains: Saposin B type domain and Saposin-like. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F32D8.9 | |||||||
| Corresponding_transcript | F32D8.9.1 | ||||||||
| Other_sequence | CRC00535_1 | ||||||||
| FD516852.1 | |||||||||
| CSC01514_1 | |||||||||
| CR11401 | |||||||||
| Associated_feature | WBsf234463 | ||||||||
| WBsf234464 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00031686 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00075936 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00046141 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00014223 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1029135 | ||||||||
| Expr1032488 | |||||||||
| Expr1150029 | |||||||||
| Expr2016071 | |||||||||
| Expr2034307 | |||||||||
| Drives_construct | WBCnstr00035277 | ||||||||
| Construct_product | WBCnstr00035277 | ||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (145) | |||||||||
| Interaction (11) | |||||||||
| Map_info | Map | V | Position | 2.82959 | Error | 0.000825 | |||
| Positive | Positive_clone | F32D8 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00024209 | ||||||||
| WBPaper00065331 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
