WormBase Tree Display for Gene: WBGene00004999
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| WBGene00004999 | Evidence | Author_evidence | Patthy L | ||||||
|---|---|---|---|---|---|---|---|---|---|
| Hodgkin JA | |||||||||
| SMap | S_parent | Sequence | K09F5 | ||||||
| Identity | Version | 2 | |||||||
| Name | CGC_name | spp-14 | |||||||
| Sequence_name | K09F5.3 | ||||||||
| Molecular_name | K09F5.3 | ||||||||
| K09F5.3.1 | |||||||||
| CE38527 | |||||||||
| Other_name | uvt-1 | CGC_data_submission | |||||||
| CELE_K09F5.3 | Accession_evidence | NDB | BX284606 | ||||||
| Public_name | spp-14 | ||||||||
| DB_info | Database | WormQTL | gene | WBGene00004999 | |||||
| WormFlux | gene | WBGene00004999 | |||||||
| NDB | locus_tag | CELE_K09F5.3 | |||||||
| NCBI | gene | 181032 | |||||||
| RefSeq | protein | NM_001047806.7 | |||||||
| TREEFAM | TREEFAM_ID | TF343148 | |||||||
| TrEMBL | UniProtAcc | Q2XN18 | |||||||
| UniProt_GCRP | UniProtAcc | Q2XN18 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:37 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| 2 | 19 Dec 2005 16:53:56 | WBPerson1849 | Event | Split_into | WBGene00044698 | ||||
| Split_into | WBGene00044698 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | spp | ||||||||
| Allele (15) | |||||||||
| Legacy_information | Abundant transcript present in larvae adults. | ||||||||
| [C.elegansII] NMK. Abundant 0.5 kb transcript present in larvae, adults. [Heine and Blumenthal 1986] | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (21) | |||||||||
| Paralog (12) | |||||||||
| Structured_description | Automated_description | Expressed in male. Is predicted to encode a protein with the following domains: Saposin B type domain and Saposin-like. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | K09F5.3 | |||||||
| Corresponding_CDS_history | K09F5.3a:wp152 | ||||||||
| K09F5.3b:wp152 | |||||||||
| K09F5.3c:wp152 | |||||||||
| Corresponding_transcript | K09F5.3.1 | ||||||||
| Other_sequence | FD515535.1 | ||||||||
| CRC02133_1 | |||||||||
| CJC02594_1 | |||||||||
| CBC01458_1 | |||||||||
| CSC00173_1 | |||||||||
| Associated_feature | WBsf648327 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00001068 | Inferred_automatically | RNAi_primary | |||||
| Expr_pattern | Expr1237 | ||||||||
| Expr1015786 | |||||||||
| Expr1154147 | |||||||||
| Expr2016069 | |||||||||
| Expr2034305 | |||||||||
| Drives_construct | WBCnstr00035279 | ||||||||
| Construct_product | WBCnstr00035279 | ||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (211) | |||||||||
| Interaction (11) | |||||||||
| Map_info | Map | X | Position | -1.33363 | Error | 0.000987 | |||
| Positive | Positive_clone | K09F5 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00000873 | ||||||||
| WBPaper00001841 | |||||||||
| WBPaper00024209 | |||||||||
| WBPaper00025088 | |||||||||
| WBPaper00033099 | |||||||||
| WBPaper00064841 | |||||||||
| WBPaper00065988 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
