WormBase Tree Display for Gene: WBGene00004987
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| WBGene00004987 | SMap | S_parent | Sequence | T08A9 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | spp-2 | |||||||
| Sequence_name | T08A9.12 | ||||||||
| Molecular_name | T08A9.12 | ||||||||
| T08A9.12.1 | |||||||||
| CE31231 | |||||||||
| Other_name | CELE_T08A9.12 | Accession_evidence | NDB | BX284606 | |||||
| Public_name | spp-2 | ||||||||
| DB_info | Database | AceView | gene | XH936 | |||||
| WormQTL | gene | WBGene00004987 | |||||||
| WormFlux | gene | WBGene00004987 | |||||||
| NDB | locus_tag | CELE_T08A9.12 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00004987|UniProtKB=Q8MPX7 | |||||||
| family | PTHR21579 | ||||||||
| NCBI | gene | 259714 | |||||||
| RefSeq | protein | NM_171721.6 | |||||||
| TREEFAM | TREEFAM_ID | TF343148 | |||||||
| TrEMBL | UniProtAcc | Q8MPX7 | |||||||
| UniProt_GCRP | UniProtAcc | Q8MPX7 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:37 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | spp | ||||||||
| Allele (22) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00084450 | ||||||||
| Ortholog (15) | |||||||||
| Paralog (12) | |||||||||
| Structured_description | Concise_description | spp-2 encodes an antimicrobial peptide that belongs to the SPP-protein family, called caenopores, with structural similarity to saposin-like proteins (SAPLIPs), the amoebapores and the mammalian NK-lysin and granulysin; caenopores are part of the worm's innate immune system and interact with and eliminate bacteria via membrane pore-forming activity; C. elegans has at least 33 putative SPP proteins; phylogenetic analysis indicates that spp-2 is most similar to spp-4, spp-5 and spp-6. | Paper_evidence | WBPaper00035289 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson1823 | |||||||||
| WBPerson567 | |||||||||
| Date_last_updated | 17 Sep 2013 00:00:00 | ||||||||
| Automated_description | Involved in defense response to Gram-positive bacterium. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | T08A9.12 | |||||||
| Corresponding_transcript | T08A9.12.1 | ||||||||
| Other_sequence | Tcir_isotig10802 | ||||||||
| FD515466.1 | |||||||||
| CSC00512_1 | |||||||||
| FD515127.1 | |||||||||
| CBC06526_1 | |||||||||
| MH05494 | |||||||||
| FD516413.1 | |||||||||
| FD516016.1 | |||||||||
| CBC06526_2 | |||||||||
| Associated_feature | WBsf237568 | ||||||||
| WBsf237569 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00052823 | Inferred_automatically | RNAi_primary | |||||
| Expr_pattern | Expr1016870 | ||||||||
| Expr1156423 | |||||||||
| Expr2016080 | |||||||||
| Expr2034316 | |||||||||
| Drives_construct | WBCnstr00035290 | ||||||||
| Construct_product | WBCnstr00035290 | ||||||||
| Microarray_results (16) | |||||||||
| Expression_cluster (318) | |||||||||
| Map_info | Map | X | Position | -1.77469 | |||||
| Positive | Positive_clone | T08A9 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00006437 | ||||||||
| WBPaper00024209 | |||||||||
| WBPaper00044985 | |||||||||
| WBPaper00058665 | |||||||||
| WBPaper00065988 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
