WormBase Tree Display for Gene: WBGene00004974
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| WBGene00004974 | SMap | S_parent | Sequence | F25H8 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | spe-29 | Person_evidence | WBPerson252 | |||||
| Sequence_name | F25H8.7 | ||||||||
| Molecular_name | F25H8.7 | ||||||||
| F25H8.7.1 | |||||||||
| CE26700 | |||||||||
| Other_name | CELE_F25H8.7 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | spe-29 | ||||||||
| DB_info | Database | AceView | gene | 4K699 | |||||
| WormQTL | gene | WBGene00004974 | |||||||
| WormFlux | gene | WBGene00004974 | |||||||
| NDB | locus_tag | CELE_F25H8.7 | |||||||
| NCBI | gene | 177849 | |||||||
| RefSeq | protein | NM_069390.5 | |||||||
| TrEMBL | UniProtAcc | G5ED71 | |||||||
| UniProt_GCRP | UniProtAcc | G5ED71 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:37 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | spe | ||||||||
| Allele | WBVar01500079 | ||||||||
| WBVar00934852 | |||||||||
| WBVar01498996 | |||||||||
| WBVar01499925 | |||||||||
| WBVar01856453 | |||||||||
| WBVar00088041 | |||||||||
| WBVar01500245 | |||||||||
| WBVar01730517 | |||||||||
| Legacy_information | [S. L'Hernault ] spe-29 mutants are similar to spe-8, spe-12 and spe-27 mutants in that hermaphrodites are self-sterile and males are cross fertile. It is presently defined by one leaky allele, spe-29(it127). Self brood size at 16 and 25 degrees are 1-2 and 4-10 at 20 degrees. spe-29/eDf19 is still slightly self-fertile | ||||||||
| [Nance JF] virgin herms. are self-sterile, lay many oocytes, almost no eggs. Males fertile. Mated herms. make self and outcrossed progeny | |||||||||
| [C.elegansII] it127 : leaky, hermaphrodites produce nonfunctional sperm, almost self-sterile (brood 4 - 10 at 20C, 1 - 2 at16C or 25C); males are fertile. it127/Df similar. NA1. [BA] | |||||||||
| Complementation_data | [Nance JF] complements spe-27(it110), spe-27(it132ts), gon-1(e1254), gon-4(e2575) | ||||||||
| Strain | WBStrain00000422 | ||||||||
| WBStrain00000423 | |||||||||
| WBStrain00000409 | |||||||||
| WBStrain00000410 | |||||||||
| WBStrain00000413 | |||||||||
| WBStrain00000417 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00013487 | ||||||||
| 00013488 | |||||||||
| Ortholog | WBGene00086067 | Caenorhabditis remanei | From_analysis | OMA | |||||
| Inparanoid_8 | |||||||||
| WormBase-Compara | |||||||||
| WBGene00271164 | Caenorhabditis briggsae | From_analysis | WormBase-Compara | ||||||
| CSP26.g19337 | Caenorhabditis zanzibari | From_analysis | WormBase-Compara | ||||||
| CSP29.g23818 | Caenorhabditis becei | From_analysis | WormBase-Compara | ||||||
| CSP32.g8318 | Caenorhabditis sulstoni | From_analysis | WormBase-Compara | ||||||
| CSP39.g3611 | Caenorhabditis waitukubuli | From_analysis | WormBase-Compara | ||||||
| CSP40.g13045 | Caenorhabditis tribulationis | From_analysis | WormBase-Compara | ||||||
| FL83_13733 | Caenorhabditis latens | From_analysis | WormBase-Compara | ||||||
| Sp34_40253800 | Caenorhabditis inopinata | From_analysis | WormBase-Compara | ||||||
| chrIV_pilon.g11454 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Concise_description | spe-29 is predicted to encode a small and novel transmembrane protein that is required for hermaphrodite spermiogensis or sperm activation but not for male-derived sperm activation (sperm activation is the morphogenesis of a round non-motile spermatid to an amoeboid crawling sperm); however, mutant hermaphrodite spe-29 spermatids can transactivate and form functional sperm during mating with males; genetic and phenotypic evidence suggests that spe-29 acts in a common pathway with spe-8, spe-12, spe-19 and spe-27. | Paper_evidence | WBPaper00004444 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| Date_last_updated | 26 Jul 2010 00:00:00 | ||||||||
| Automated_description | Involved in spermatid development. Predicted to be located in membrane. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F25H8.7 | |||||||
| Corresponding_transcript | F25H8.7.1 | ||||||||
| Associated_feature | WBsf646268 | ||||||||
| WBsf228904 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00045559 | Inferred_automatically | RNAi_primary | |||||
| Expr_pattern | Expr1023959 | ||||||||
| Expr1032474 | |||||||||
| Expr1149474 | |||||||||
| Expr2016038 | |||||||||
| Expr2034272 | |||||||||
| Drives_construct | WBCnstr00035297 | ||||||||
| Construct_product | WBCnstr00035297 | ||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (81) | |||||||||
| Interaction (34) | |||||||||
| WBProcess | WBbiopr:00000069 | ||||||||
| Map_info | Map | IV | Position | 4.45304 | Error | 0.000725 | |||
| Well_ordered | |||||||||
| Positive | Positive_clone | F25H8 | Person_evidence | WBPerson440 | |||||
| Author_evidence | Jeremy Nance | ||||||||
| Inferred_automatically | From sequence, transcript, pseudogene data | ||||||||
| Mapping_data | Multi_point (14) | ||||||||
| Pos_neg_data | 8923 | ||||||||
| 8924 | |||||||||
| 8925 | |||||||||
| 8985 | |||||||||
| 8986 | |||||||||
| Reference (23) | |||||||||
| Remark | [Nance JF]it127 is a slightly leaky allele; hermaphrodites lay between 0 and 14 eggs among many oocytes at 20C. It is possible to grow up a population of spe-29(it127) hermaphrodites in the absence of males | ||||||||
| Method | Gene |
