WormBase Tree Display for Gene: WBGene00004826
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WBGene00004826 | Evidence | CGC_data_submission | |||||||
---|---|---|---|---|---|---|---|---|---|
SMap | S_parent | Sequence | R12H7 | ||||||
Identity | Version | 1 | |||||||
Name | CGC_name | skr-20 | Person_evidence | WBPerson322 | |||||
Sequence_name | R12H7.5 | ||||||||
Molecular_name (3) | |||||||||
Other_name | CELE_R12H7.5 | Accession_evidence | NDB | BX284606 | |||||
Public_name | skr-20 | ||||||||
DB_info | Database | AceView | gene | XN840 | |||||
WormQTL | gene | WBGene00004826 | |||||||
WormFlux | gene | WBGene00004826 | |||||||
NDB | locus_tag | CELE_R12H7.5 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00004826|UniProtKB=G5EE98 | |||||||
family | PTHR11165 | ||||||||
NCBI | gene | 181445 | |||||||
RefSeq | protein | NM_077791.6 | |||||||
TREEFAM | TREEFAM_ID | TF300142 | |||||||
TrEMBL | UniProtAcc | G5EE98 | |||||||
UniProt_GCRP | UniProtAcc | G5EE98 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:36 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | skr | ||||||||
Allele (13) | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00015684 | ||||||||
00015685 | |||||||||
00015686 | |||||||||
00015687 | |||||||||
00015688 | |||||||||
00015689 | |||||||||
00015690 | |||||||||
00113232 | |||||||||
Contained_in_operon | CEOPX116 | ||||||||
Ortholog (77) | |||||||||
Paralog (20) | |||||||||
Structured_description | Concise_description | The skr-20 gene encodes a homolog of Skp1 in S. cerevisiae that has no known function in vivo, since skr-20(RNAi) animals are at least superficially normal. | Paper_evidence | WBPaper00005128 | |||||
WBPaper00005129 | |||||||||
Curator_confirmed | WBPerson567 | ||||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
Automated_description | Predicted to enable cullin family protein binding activity. Predicted to be involved in SCF-dependent proteasomal ubiquitin-dependent protein catabolic process. Predicted to be located in cytoplasm and nucleus. Is an ortholog of human SKP1 (S-phase kinase associated protein 1). | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | R12H7.5 | |||||||
Corresponding_transcript | R12H7.5.1 | ||||||||
Other_sequence | AF440519 | ||||||||
CBC00224_1 | |||||||||
Associated_feature | WBsf671189 | ||||||||
WBsf238106 | |||||||||
Experimental_info | RNAi_result | WBRNAi00086808 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00034902 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00051867 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00086799 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00098058 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00017802 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00094813 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00086807 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00098133 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr1011467 | ||||||||
Expr1032401 | |||||||||
Expr1155526 | |||||||||
Expr2015848 | |||||||||
Expr2034081 | |||||||||
Drives_construct | WBCnstr00035360 | ||||||||
Construct_product | WBCnstr00035360 | ||||||||
Microarray_results (18) | |||||||||
Expression_cluster (130) | |||||||||
Interaction (13) | |||||||||
Map_info | Map | X | Position | 10.3998 | |||||
Positive | Positive_clone | R12H7 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Reference | WBPaper00029151 | ||||||||
WBPaper00029221 | |||||||||
WBPaper00055090 | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |