WormBase Tree Display for Gene: WBGene00004825
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WBGene00004825 | Evidence | CGC_data_submission | ||||
---|---|---|---|---|---|---|
SMap | S_parent | Sequence | R12H7 | |||
Identity (6) | ||||||
Gene_info | Biotype | SO:0001217 | ||||
Gene_class | skr | |||||
Allele | WBVar01499887 | |||||
WBVar01499519 | ||||||
WBVar01499888 | ||||||
WBVar01499710 | ||||||
WBVar00068989 | ||||||
WBVar01200023 | ||||||
WBVar00521377 | ||||||
WBVar01498960 | ||||||
WBVar01500067 | ||||||
RNASeq_FPKM (74) | ||||||
GO_annotation | 00011347 | |||||
00011348 | ||||||
00011349 | ||||||
00011350 | ||||||
00011351 | ||||||
00113231 | ||||||
Contained_in_operon | CEOPX116 | |||||
Ortholog (23) | ||||||
Paralog (20) | ||||||
Structured_description | Concise_description | The skr-19 gene encodes a homolog of Skp1 in S. cerevisiae that has no known function in vivo, since skr-19(RNAi) animals are at least superficially normal. | Paper_evidence (2) | |||
Curator_confirmed | WBPerson567 | |||||
Date_last_updated | 17 Jun 2004 00:00:00 | |||||
Automated_description | Predicted to enable cullin family protein binding activity. Predicted to be involved in SCF-dependent proteasomal ubiquitin-dependent protein catabolic process. Predicted to be located in cytoplasm and nucleus. | Paper_evidence | WBPaper00065943 | |||
Curator_confirmed | WBPerson324 | |||||
WBPerson37462 | ||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | |||||
Date_last_updated | 29 Nov 2023 00:00:00 | |||||
Molecular_info | Corresponding_CDS | R12H7.3 | ||||
Corresponding_CDS_history | R12H7.3:wp223 | |||||
Corresponding_transcript | R12H7.3.1 | |||||
Other_sequence | AF440518 | |||||
CBC02057_1 | ||||||
Associated_feature | WBsf671190 | |||||
WBsf238107 | ||||||
WBsf238108 | ||||||
WBsf238109 | ||||||
WBsf238110 | ||||||
Experimental_info | RNAi_result (11) | |||||
Expr_pattern | Expr1025571 | |||||
Expr1032400 | ||||||
Expr1155524 | ||||||
Expr2015846 | ||||||
Expr2034079 | ||||||
Microarray_results (20) | ||||||
Expression_cluster (186) | ||||||
Interaction | WBInteraction000216243 | |||||
WBInteraction000227307 | ||||||
WBInteraction000242982 | ||||||
WBInteraction000262705 | ||||||
WBInteraction000344749 | ||||||
WBInteraction000370008 | ||||||
WBInteraction000384784 | ||||||
WBInteraction000431711 | ||||||
WBInteraction000458671 | ||||||
Map_info | Map | X | Position | 10.4048 | ||
Positive | Positive_clone | R12H7 | Inferred_automatically | From sequence, transcript, pseudogene data | ||
Pseudo_map_position | ||||||
Reference | WBPaper00029151 | |||||
WBPaper00029221 | ||||||
WBPaper00055090 | ||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||
Method | Gene |