WormBase Tree Display for Gene: WBGene00004680
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| WBGene00004680 | SMap | S_parent | Sequence | C29H12 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | rars-2 | Person_evidence | WBPerson36 | |||||
| WBPerson10953 | |||||||||
| Sequence_name | C29H12.1 | ||||||||
| Molecular_name | C29H12.1 | ||||||||
| C29H12.1.1 | |||||||||
| CE17479 | |||||||||
| Other_name | rrt-2 | ||||||||
| CELE_C29H12.1 | Accession_evidence | NDB | BX284602 | ||||||
| Public_name | rars-2 | ||||||||
| DB_info | Database (13) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:36 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| 2 | 29 Jan 2010 14:16:16 | WBPerson2970 | Name_change | CGC_name | rars-2 | ||||
| Other_name | rrt-2 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | rars | ||||||||
| Allele (25) | |||||||||
| Strain | WBStrain00047691 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (16) | |||||||||
| Contained_in_operon | CEOP2236 | ||||||||
| Ortholog (38) | |||||||||
| Paralog | WBGene00004679 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| Structured_description | Automated_description | Predicted to enable arginine-tRNA ligase activity. Predicted to be involved in arginyl-tRNA aminoacylation and mitochondrial translation. Predicted to be located in mitochondrion. Expressed in body wall musculature and pharynx. Human ortholog(s) of this gene implicated in pontocerebellar hypoplasia type 6. Is an ortholog of human RARS2 (arginyl-tRNA synthetase 2, mitochondrial). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0060275 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:21406) | ||||
| Molecular_info | Corresponding_CDS | C29H12.1 | |||||||
| Corresponding_transcript | C29H12.1.1 | ||||||||
| Other_sequence (33) | |||||||||
| Associated_feature | WBsf644256 | ||||||||
| WBsf988066 | |||||||||
| WBsf988067 | |||||||||
| WBsf1012324 | |||||||||
| WBsf221393 | |||||||||
| WBsf221394 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00064670 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00061593 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00029340 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00024675 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00011366 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00093118 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00027198 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00041509 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr2041 | ||||||||
| Expr1015798 | |||||||||
| Expr1032314 | |||||||||
| Expr1145533 | |||||||||
| Expr2015259 | |||||||||
| Expr2033493 | |||||||||
| Drives_construct | WBCnstr00037922 | ||||||||
| Construct_product | WBCnstr00037922 | ||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (124) | |||||||||
| SAGE_tag (13) | |||||||||
| Interaction (66) | |||||||||
| Map_info | Map | II | Position | -0.460138 | Error | 0.005035 | |||
| Positive | Positive_clone | C29H12 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00055090 | |||||||||
| WBPaper00059054 | |||||||||
| Remark | dl1 : probably mitochondrial | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
