WormBase Tree Display for Gene: WBGene00004478

WBGene00004478 SMap: S_parent: Sequence: F40F8
  Identity: Version: 1
    Name: CGC_name: rps-9
      Sequence_name: F40F8.10
      Molecular_name: F40F8.10
        F40F8.10.1
        CE05849
      Other_name: CELE_F40F8.10 Accession_evidence: NDB BX284602
      Public_name: rps-9
    DB_info: Database: AceView gene 2L416
        WormQTL gene WBGene00004478
        WormFlux gene WBGene00004478
        NDB locus_tag CELE_F40F8.10
        Panther gene CAEEL|WormBase=WBGene00004478|UniProtKB=Q20228
          family PTHR11831
        NCBI gene 174699
        RefSeq protein NM_063983.6
        SwissProt UniProtAcc Q20228
        TREEFAM TREEFAM_ID TF300795
        UniProt_GCRP UniProtAcc Q20228
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:35 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: rps
    Allele (21)
    Legacy_information: Orthologous to yeast (S.cerevisiae) ribosomal protein rps9 using blastP
    RNASeq_FPKM (74)
    GO_annotation (20)
    Ortholog: WBGene00053508 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00025919 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00143190 Caenorhabditis brenneri From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00136429 Caenorhabditis japonica From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00094624 Pristionchus pacificus From_analysis: OMA
      WBGene00234306 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g6451 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g14994 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g17084 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g1125 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g9093 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g16613 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g6469 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g3030 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g5827 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g11602 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00130.g5173 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-rps-9 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold629.g16333 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_01945.g24003 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_18810 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_005410 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g02390 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g22694 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_20336000 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrII_pilon.g5881 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00248114 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00265263 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00287347 Trichuris muris From_analysis: WormBase-Compara
      SGD:S000000393 Saccharomyces cerevisiae From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
      SGD:S000006002 Saccharomyces cerevisiae From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
      FB:FBgn0010408 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      ZFIN:ZDB-GENE-010724-15 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      HGNC:10442 Homo sapiens From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      MGI:1924096 Mus musculus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      RGD:619889 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      RGD:1566136 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      RGD:2320851 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      RGD:9089855 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
    Paralog: WBGene00016740 Caenorhabditis elegans From_analysis: Panther
    Structured_description: Concise_description: rps-9 encodes a small ribosomal subunit S9 protein. Curator_confirmed: WBPerson567
          Date_last_updated: 17 Jun 2004 00:00:00
      Automated_description: Predicted to enable rRNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in ribosomal small subunit biogenesis. Predicted to be located in cytoplasm; nucleolus; and ribosome. Predicted to be part of cytosolic small ribosomal subunit and small-subunit processome. Is an ortholog of human RPS9 (ribosomal protein S9). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F40F8.10
    Corresponding_transcript: F40F8.10.1
    Other_sequence (237)
    Associated_feature: WBsf650546
      WBsf650547
      WBsf666117
      WBsf666118
      WBsf666119
      WBsf989631
      WBsf1013165
      WBsf223894
  Experimental_info: RNAi_result (45)
    Expr_pattern: Expr1026473
      Expr1032281
      Expr1150739
      Expr2015533
      Expr2033768
    Microarray_results (21)
    Expression_cluster (162)
    Interaction (251)
  Map_info: Map: II Position: 3.319 Error: 0.001084
    Positive: Positive_clone: F40F8 Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference (12)
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene