WormBase Tree Display for Gene: WBGene00004478
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WBGene00004478 | SMap | S_parent | Sequence | F40F8 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 1 | |||||||
Name | CGC_name | rps-9 | |||||||
Sequence_name | F40F8.10 | ||||||||
Molecular_name | F40F8.10 | ||||||||
F40F8.10.1 | |||||||||
CE05849 | |||||||||
Other_name | CELE_F40F8.10 | Accession_evidence | NDB | BX284602 | |||||
Public_name | rps-9 | ||||||||
DB_info | Database | AceView | gene | 2L416 | |||||
WormQTL | gene | WBGene00004478 | |||||||
WormFlux | gene | WBGene00004478 | |||||||
NDB | locus_tag | CELE_F40F8.10 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00004478|UniProtKB=Q20228 | |||||||
family | PTHR11831 | ||||||||
NCBI | gene | 174699 | |||||||
RefSeq | protein | NM_063983.6 | |||||||
SwissProt | UniProtAcc | Q20228 | |||||||
TREEFAM | TREEFAM_ID | TF300795 | |||||||
UniProt_GCRP | UniProtAcc | Q20228 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:35 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | rps | ||||||||
Allele (21) | |||||||||
Legacy_information | Orthologous to yeast (S.cerevisiae) ribosomal protein rps9 using blastP | ||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00067533 | ||||||||
00067534 | |||||||||
00067535 | |||||||||
00067536 | |||||||||
00067537 | |||||||||
00067538 | |||||||||
00067539 | |||||||||
00067540 | |||||||||
00067541 | |||||||||
00067542 | |||||||||
00067543 | |||||||||
00067544 | |||||||||
00067545 | |||||||||
00067546 | |||||||||
00067547 | |||||||||
00112976 | |||||||||
00112977 | |||||||||
00112978 | |||||||||
00112979 | |||||||||
00112980 | |||||||||
Ortholog (39) | |||||||||
Paralog | WBGene00016740 | Caenorhabditis elegans | From_analysis | Panther | |||||
Structured_description | Concise_description | rps-9 encodes a small ribosomal subunit S9 protein. | Curator_confirmed | WBPerson567 | |||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
Automated_description | Predicted to enable rRNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in ribosomal small subunit biogenesis. Predicted to be located in cytoplasm; nucleolus; and ribosome. Predicted to be part of cytosolic small ribosomal subunit and small-subunit processome. Is an ortholog of human RPS9 (ribosomal protein S9). | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | F40F8.10 | |||||||
Corresponding_transcript | F40F8.10.1 | ||||||||
Other_sequence (237) | |||||||||
Associated_feature | WBsf650546 | ||||||||
WBsf650547 | |||||||||
WBsf666117 | |||||||||
WBsf666118 | |||||||||
WBsf666119 | |||||||||
WBsf989631 | |||||||||
WBsf1013165 | |||||||||
WBsf223894 | |||||||||
Experimental_info | RNAi_result (45) | ||||||||
Expr_pattern | Expr1026473 | ||||||||
Expr1032281 | |||||||||
Expr1150739 | |||||||||
Expr2015533 | |||||||||
Expr2033768 | |||||||||
Microarray_results (21) | |||||||||
Expression_cluster (162) | |||||||||
Interaction (251) | |||||||||
Map_info | Map | II | Position | 3.319 | Error | 0.001084 | |||
Positive | Positive_clone | F40F8 | Inferred_automatically | From CDS info | |||||
From sequence, transcript, pseudogene data | |||||||||
Pseudo_map_position | |||||||||
Reference (12) | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |