WormBase Tree Display for Gene: WBGene00004465
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| WBGene00004465 | Evidence | CGC_data_submission | |||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | T06D8 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | rpn-9 | Person_evidence | WBPerson1551 | |||||
| Sequence_name | T06D8.8 | ||||||||
| Molecular_name | T06D8.8 | ||||||||
| T06D8.8.1 | |||||||||
| CE02329 | |||||||||
| Other_name | CELE_T06D8.8 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | rpn-9 | ||||||||
| DB_info | Database | AceView | gene | 2L528 | |||||
| WormQTL | gene | WBGene00004465 | |||||||
| WormFlux | gene | WBGene00004465 | |||||||
| NDB | locus_tag | CELE_T06D8.8 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00004465|UniProtKB=Q22253 | |||||||
| family | PTHR10539 | ||||||||
| NCBI | gene | 174715 | |||||||
| RefSeq | protein | NM_064004.8 | |||||||
| TREEFAM | TREEFAM_ID | TF105612 | |||||||
| TrEMBL | UniProtAcc | Q22253 | |||||||
| UniProt_GCRP | UniProtAcc | Q22253 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:35 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | rpn | ||||||||
| Allele (16) | |||||||||
| Strain | WBStrain00036223 | ||||||||
| WBStrain00054676 | |||||||||
| WBStrain00054679 | |||||||||
| Component_of_genotype | WBGenotype00000100 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00074684 | ||||||||
| 00074685 | |||||||||
| 00074686 | |||||||||
| 00074687 | |||||||||
| 00074688 | |||||||||
| 00074689 | |||||||||
| 00074690 | |||||||||
| 00074691 | |||||||||
| 00074692 | |||||||||
| 00074693 | |||||||||
| Contained_in_operon | CEOP2524 | ||||||||
| Ortholog (35) | |||||||||
| Structured_description | Concise_description | rpn-9 is predicted to encode a non-ATPase subunit of the 19S regulatory complex of the proteasome that that affects body morphology, embryonic viability, locomotion, larval viability, fertility, and growth; interacts with RPN-11 in yeast two-hybrid assays. | Paper_evidence | WBPaper00004888 | |||||
| WBPaper00005599 | |||||||||
| WBPaper00005654 | |||||||||
| WBPaper00006395 | |||||||||
| Curator_confirmed | WBPerson48 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable structural molecule activity. Predicted to be involved in ubiquitin-dependent protein catabolic process. Predicted to be located in cytosol and nucleus. Predicted to be part of proteasome regulatory particle, lid subcomplex. Is an ortholog of human PSMD13 (proteasome 26S subunit, non-ATPase 13). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Modifies_disease | DOID:332 | ||||||||
| DOID:9255 | |||||||||
| Modifies_disease_in_annotation | WBDOannot00001141 | ||||||||
| WBDOannot00001142 | |||||||||
| Molecular_info | Corresponding_CDS | T06D8.8 | |||||||
| Corresponding_transcript | T06D8.8.1 | ||||||||
| Other_sequence (81) | |||||||||
| Associated_feature | WBsf650554 | ||||||||
| WBsf650555 | |||||||||
| WBsf650556 | |||||||||
| WBsf981282 | |||||||||
| WBsf223910 | |||||||||
| WBsf223911 | |||||||||
| Experimental_info | RNAi_result (26) | ||||||||
| Expr_pattern | Chronogram435 | ||||||||
| Expr6621 | |||||||||
| Expr1027703 | |||||||||
| Expr1032268 | |||||||||
| Expr1156253 | |||||||||
| Expr2015497 | |||||||||
| Expr2033732 | |||||||||
| Drives_construct | WBCnstr00003961 | ||||||||
| WBCnstr00035464 | |||||||||
| Construct_product | WBCnstr00035464 | ||||||||
| Microarray_results (22) | |||||||||
| Expression_cluster (163) | |||||||||
| Interaction (193) | |||||||||
| Map_info | Map | II | Position | 3.37747 | Error | 0.005347 | |||
| Positive | Positive_clone | T06D8 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Mapping_data | Multi_point | 5187 | |||||||
| Pseudo_map_position | |||||||||
| Reference (15) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
