WormBase Tree Display for Gene: WBGene00004460
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WBGene00004460 | Evidence | CGC_data_submission | |||||||
---|---|---|---|---|---|---|---|---|---|
SMap | S_parent | Sequence | C30C11 | ||||||
Identity | Version | 1 | |||||||
Name | CGC_name | rpn-3 | Person_evidence | WBPerson1551 | |||||
Sequence_name | C30C11.2 | ||||||||
Molecular_name | C30C11.2 | ||||||||
C30C11.2.1 | |||||||||
CE00101 | |||||||||
Other_name | CELE_C30C11.2 | Accession_evidence | NDB | BX284603 | |||||
Public_name | rpn-3 | ||||||||
DB_info | Database | AceView | gene | 3J537 | |||||
WormQTL | gene | WBGene00004460 | |||||||
WormFlux | gene | WBGene00004460 | |||||||
NDB | locus_tag | CELE_C30C11.2 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00004460|UniProtKB=Q04908 | |||||||
family | PTHR10758 | ||||||||
NCBI | gene | 176196 | |||||||
RefSeq | protein | NM_066468.5 | |||||||
SwissProt | UniProtAcc | Q04908 | |||||||
TREEFAM | TREEFAM_ID | TF106110 | |||||||
UniProt_GCRP | UniProtAcc | Q04908 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:35 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | rpn | ||||||||
Allele (21) | |||||||||
Strain | WBStrain00001197 | ||||||||
WBStrain00047450 | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00052645 | ||||||||
00052646 | |||||||||
00052647 | |||||||||
00052648 | |||||||||
00052649 | |||||||||
00052650 | |||||||||
00112935 | |||||||||
00112936 | |||||||||
00112937 | |||||||||
Contained_in_operon | CEOP3528 | ||||||||
Ortholog (35) | |||||||||
Paralog (2) | |||||||||
Structured_description | Automated_description | Predicted to enable enzyme regulator activity. Involved in programmed cell death involved in cell development. Predicted to be part of proteasome regulatory particle, lid subcomplex. Expressed in head; intestine; and tail. Is an ortholog of human PSMD3 (proteasome 26S subunit, non-ATPase 3). | Paper_evidence | WBPaper00065943 | |||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | C30C11.2 | |||||||
Corresponding_transcript | C30C11.2.1 | ||||||||
Other_sequence (100) | |||||||||
Associated_feature | WBsf645418 | ||||||||
WBsf645419 | |||||||||
WBsf659288 | |||||||||
WBsf225418 | |||||||||
WBsf225419 | |||||||||
WBsf225420 | |||||||||
WBsf225421 | |||||||||
Experimental_info | RNAi_result (22) | ||||||||
Expr_pattern | Chronogram1395 | ||||||||
Chronogram1679 | |||||||||
Expr5382 | |||||||||
Expr1013089 | |||||||||
Expr1032263 | |||||||||
Expr1145554 | |||||||||
Expr2015491 | |||||||||
Expr2033726 | |||||||||
Drives_construct | WBCnstr00002090 | ||||||||
WBCnstr00035468 | |||||||||
Construct_product | WBCnstr00035468 | ||||||||
Microarray_results (20) | |||||||||
Expression_cluster (163) | |||||||||
Interaction (162) | |||||||||
Map_info | Map | III | Position | -0.259374 | Error | 0.000552 | |||
Positive | Positive_clone | C30C11 | Inferred_automatically | From CDS info | |||||
From sequence, transcript, pseudogene data | |||||||||
Pseudo_map_position | |||||||||
Reference (14) | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |